Parental gene: | Fdps, ENSMUSG00000059743 |
| Aliases: | Fdps, 6030492I17Rik, AI256750, Fdpsl1, mKIAA1293 |
| Description: | farnesyl diphosphate synthetase [Source:MGI Symbol;Acc:MGI:104888] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 3:89093591..89101967(-) |
>ENSMUSG00000059743
ATGAATGGGAACCAGAAATTGGATGCTTATAACCAAGAAAAGCAGAATTTCATCCAGCACTTCTCCCAGATCGTCAAGGT
GCTGACTGAGAAGGAGCTGGGACACCCAGAGATAGGGGATGCTATTGCCCGGCTCAAGGAGGTCCTAGAGTACAATGCCT
TAGGAGGCAAGTACAACCGGGGTTTGACCGTGGTACAAGCCTTCCAGGAGCTGGTGGAGCCGAAGAAACAGGATGCTGAG
AGTCTTCAGCGGGCCCTGACAGTGGGCTGGTGTGTAGAACTGCTCCAGGCTTTCTTCCTTGTGTCAGATGACATCATGGA
CTCTTCCCTCACTCGCCGGGGACAGATCTGCTGGTATCAGAAGCCAGGCATAGGCTTGGATGCCATCAACGACGCTCTGC
TTCTGGAAGCCTCCATCTATCGTTTGCTGAAGTTCTACTGCAGGGAGCAGCCCTACTACCTGAACCTGCTGGAGCTCTTT
CTGCAGAGTTCCTATCAGACAGAGATCGGGCAGACTCTAGACCTCATGACAGCACCCCAGGGCCATGTGGATCTTGGTAG
ATACACTGAAAAGAGGTACAAATCGATTGTCAAGTACAAGACGGCTTTCTACTCTTTCTACCTGCCTATTGCGGCCGCCA
TGTACATGGCAGGCATTGATGGGGAGAAGGAACACGCCAATGCCCTGAAGATCCTGATGGAGATGGGCGAGTTCTTCCAG
GTCCAGGACGACTACCTTGATCTCTTTGGAGACCCCAGTGTGACGGGAAAGGTCGGCACTGACATCCAGGACAACAAATG
CAGCTGGCTGGTGGTTCAGTGTCTGCTACGAGCCTCTCCTCAACAGCGCCAGATCTTAGAGGAGAATTATGGGCAGAAGG
ACCCAGAAAAAGTGGCTCGGGTGAAAGCACTGTATGAGGCGCTGGATCTGCAGTCTGCTTTCTTCAAGTATGAGGAAGAC
AGTTACAACCGCCTCAAGAGTCTCATAGAGCAGTGCTCTGCGCCCCTGCCCCCATCCATCTTCATGGAACTTGCAAACAA
GATCTACAAACGGAGAAAGTGA
ATGAATGGGAACCAGAAATTGGATGCTTATAACCAAGAAAAGCAGAATTTCATCCAGCACTTCTCCCAGATCGTCAAGGT
GCTGACTGAGAAGGAGCTGGGACACCCAGAGATAGGGGATGCTATTGCCCGGCTCAAGGAGGTCCTAGAGTACAATGCCT
TAGGAGGCAAGTACAACCGGGGTTTGACCGTGGTACAAGCCTTCCAGGAGCTGGTGGAGCCGAAGAAACAGGATGCTGAG
AGTCTTCAGCGGGCCCTGACAGTGGGCTGGTGTGTAGAACTGCTCCAGGCTTTCTTCCTTGTGTCAGATGACATCATGGA
CTCTTCCCTCACTCGCCGGGGACAGATCTGCTGGTATCAGAAGCCAGGCATAGGCTTGGATGCCATCAACGACGCTCTGC
TTCTGGAAGCCTCCATCTATCGTTTGCTGAAGTTCTACTGCAGGGAGCAGCCCTACTACCTGAACCTGCTGGAGCTCTTT
CTGCAGAGTTCCTATCAGACAGAGATCGGGCAGACTCTAGACCTCATGACAGCACCCCAGGGCCATGTGGATCTTGGTAG
ATACACTGAAAAGAGGTACAAATCGATTGTCAAGTACAAGACGGCTTTCTACTCTTTCTACCTGCCTATTGCGGCCGCCA
TGTACATGGCAGGCATTGATGGGGAGAAGGAACACGCCAATGCCCTGAAGATCCTGATGGAGATGGGCGAGTTCTTCCAG
GTCCAGGACGACTACCTTGATCTCTTTGGAGACCCCAGTGTGACGGGAAAGGTCGGCACTGACATCCAGGACAACAAATG
CAGCTGGCTGGTGGTTCAGTGTCTGCTACGAGCCTCTCCTCAACAGCGCCAGATCTTAGAGGAGAATTATGGGCAGAAGG
ACCCAGAAAAAGTGGCTCGGGTGAAAGCACTGTATGAGGCGCTGGATCTGCAGTCTGCTTTCTTCAAGTATGAGGAAGAC
AGTTACAACCGCCTCAAGAGTCTCATAGAGCAGTGCTCTGCGCCCCTGCCCCCATCCATCTTCATGGAACTTGCAAACAA
GATCTACAAACGGAGAAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 21 .52 RPM |
| SRP007412_cerebellum | 12 .42 RPM |
| SRP007412_heart | 7 .13 RPM |
| SRP007412_kidney | 9 .76 RPM |
| SRP007412_liver | 155 .82 RPM |
| SRP007412_testis | 39 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000030749 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000008364 | possible_ortholog | 11 retrogenes | |
| Echinops telfairi | ENSETEG00000001154 | ortholog_one2one | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000023144 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | possible_ortholog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000043377 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013326 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_590 | 98.45 | 54.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1028 | 92.23 | 57.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1552 | 86.63 | 57.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_2802 | 94.12 | 95.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_3625 | 92.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000059743 retrocopies