Parental gene: | FDPS, ENSCAFG00000030749 |
| Aliases: | None |
| Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 7:42241144..42249405(-) |
>ENSCAFG00000030749
GTGATGCCCCTGTCCCGCTGGCTGAGATCTGTGGGGGTCTTCTTGCTGCCAGCCTCTTGCTGGGCGCCCCGGGAAAGGTG
GCTGGGTCTCCACCGGCGGCCCTCCCTGGTGCACGGGTTCCCAGTCCTGGGGGCCTGGCACAGTGCCCGCTGCTGGTGCC
AAACGTGGACAGAGGAGCCTCGAGCACTTTACTCCTCCCTCAGAATGAATGGAGACCAGAAATTGGACGCTTATGCCCAA
GCAAGGCAGGATTTCATCCAGCACTTCCCCCAGATTGTCAAGATACTGACTGAGGATGGCATGGGCCACCCGGAGACAGG
AGACGCCATTGCCCGGCTCAAGGAGGTCTTGGAGTACAATGCTGTTGGAGGCAAGTACCAGCGGGGTTTGACAGTGCTGA
TAGCATTTCAGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGCTAGTCTGCGGCGGGCCCTGACTGTGGGCTGGTGTGTG
GAGCTGCTCCAGGCTTTCTTCCTGGTGTCAGATGACATCATGGACTCGTCCCTCACCCGACGGGGGCAGATCTGTTGGTA
TCAGAAGCCAGGCATAGGCTTGGATGCCATCAATGACGCTTTGCTTCTGGAAGCATGTATCTACCGCCTGCTGAAGGTCT
ACTGCCGGGAGCAGCCCTATTACCTGAACCTGATTGAGCTTTTCCTCCAGAGTTCCTACCAGACTGAGATTGGACAGACC
CTGGACCTCATCACCGCCCCCCAGGGCAGCGTGGATCTCAGCAGGTTCACTGAGAAGAGGTACAAGTCTATTGTCAAGTA
TAAGACGGCCTTCTACTCATTCTACCTTCCTGTGGCCGCTGCCATGTATATGGCAGGCATCGATGGGGAGAAAGAGCATG
CCAATGCTAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTTCCTGGATCTCTTTGGGGACCCC
AGTGTGACGGGCAAGATTGGCACAGACATTCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCAGGCATC
TCCAGAGCAGCGCAAAGTCCTTCAGGAGAATTATGGGCAGAAGGAGGCGGAGAAGGTGGCCCGAGTGAAGGCGCTGTACG
AGGAGCTGAACCTGCCGGCTGTTTTCACGCAGTATGAGGAAGACAGCTATAGCCGCCTCATGAGCCTCATTGAGCGGTGC
GCCTCACCCCTGCCCCCAGCCATCTTTCTGGGGCTGGCGCACAACATCTACAAGAGGAAAAAGTGA
GTGATGCCCCTGTCCCGCTGGCTGAGATCTGTGGGGGTCTTCTTGCTGCCAGCCTCTTGCTGGGCGCCCCGGGAAAGGTG
GCTGGGTCTCCACCGGCGGCCCTCCCTGGTGCACGGGTTCCCAGTCCTGGGGGCCTGGCACAGTGCCCGCTGCTGGTGCC
AAACGTGGACAGAGGAGCCTCGAGCACTTTACTCCTCCCTCAGAATGAATGGAGACCAGAAATTGGACGCTTATGCCCAA
GCAAGGCAGGATTTCATCCAGCACTTCCCCCAGATTGTCAAGATACTGACTGAGGATGGCATGGGCCACCCGGAGACAGG
AGACGCCATTGCCCGGCTCAAGGAGGTCTTGGAGTACAATGCTGTTGGAGGCAAGTACCAGCGGGGTTTGACAGTGCTGA
TAGCATTTCAGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGCTAGTCTGCGGCGGGCCCTGACTGTGGGCTGGTGTGTG
GAGCTGCTCCAGGCTTTCTTCCTGGTGTCAGATGACATCATGGACTCGTCCCTCACCCGACGGGGGCAGATCTGTTGGTA
TCAGAAGCCAGGCATAGGCTTGGATGCCATCAATGACGCTTTGCTTCTGGAAGCATGTATCTACCGCCTGCTGAAGGTCT
ACTGCCGGGAGCAGCCCTATTACCTGAACCTGATTGAGCTTTTCCTCCAGAGTTCCTACCAGACTGAGATTGGACAGACC
CTGGACCTCATCACCGCCCCCCAGGGCAGCGTGGATCTCAGCAGGTTCACTGAGAAGAGGTACAAGTCTATTGTCAAGTA
TAAGACGGCCTTCTACTCATTCTACCTTCCTGTGGCCGCTGCCATGTATATGGCAGGCATCGATGGGGAGAAAGAGCATG
CCAATGCTAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTTCCTGGATCTCTTTGGGGACCCC
AGTGTGACGGGCAAGATTGGCACAGACATTCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCAGGCATC
TCCAGAGCAGCGCAAAGTCCTTCAGGAGAATTATGGGCAGAAGGAGGCGGAGAAGGTGGCCCGAGTGAAGGCGCTGTACG
AGGAGCTGAACCTGCCGGCTGTTTTCACGCAGTATGAGGAAGACAGCTATAGCCGCCTCATGAGCCTCATTGAGCGGTGC
GCCTCACCCCTGCCCCCAGCCATCTTTCTGGGGCTGGCGCACAACATCTACAAGAGGAAAAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 58 .12 RPM |
| SRP017611_kidney | 49 .92 RPM |
| SRP017611_liver | 62 .87 RPM |
| SRP012049_cerebellum | 76 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008364 | possible_ortholog | 11 retrogenes | |
| Echinops telfairi | ENSETEG00000001154 | ortholog_one2one | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000023144 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000059743 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | possible_ortholog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000043377 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013326 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1822 | 88.21 | 50.12 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1888 | 88.86 | 85.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000030749 retrocopies