Parental gene:

Ddx50, ENSMUSG00000020076

Aliases:Ddx50, 4933429B04Rik, 8430408E17Rik, GU2, RH-II
Description:DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Source:MGI Symbol;Acc:MGI:2182303]
Organism:Mouse (Mus musculus)
Coordinates:10:62616022..62651218(-)


>ENSMUSG00000020076
ATGCCCGGGAAACTCCTCTGGGGAGACATAATGGAGCTCGAGGCACCCTTGGAAGAGTCCGAGAGCCAGAGGAAGGAGCG
GCAAAAGAGTGATAGAAGGAAGTCAAGGCACCATTCTGAATCAGAGGAGAGAACAGAAACAAGAGAAAATGGTGTTACAG
ATGACCTGGATGCTCCCAAGCCCAAAAAAGCTAAAATGAGAGAAAAGCTAAATGGAGACACCAAAGAAGGACTTAGATTT
TCAGATGAATTCTCCCCATCTCATAAGTCAAGAAGAAAAGACCTGCCAAATGGAGATGTGGATGAGTATGAGAAAAGGTC
AAAGCGAGTGTCATCCTCAGAAAACTCTCACAAGTCAAGCGATAAAGCAGAGGAGACTCTAACACGTGAACAAAAGGAAG
GAGCCTTCTCTAATTTCTCCATTTCTGAGGAGACCATAAAGCTTCTGAAAGGTCGAGGGGTAACATATCTCTTTCCTATT
CAAGTTAAAACCTTTGGTCCTGTATATGAAGGAAAAGATTTAATTGCTCAAGCCCGGACAGGAACAGGAAAGACATTCTC
TTTTGCCATACCCTTGATTGAAAGGCTCCAAAGAAATCAAGAAACAATTAAAAAAAGCCGCTCACCAAAGGTACTCGTTT
TGGCTCCAACAAGGGAATTGGCAAATCAAGTAGCCAAAGATTTCAAAGATATAACTAGAAAACTCAGTGTGGCGTGTTTT
TATGGTGGAACATCATATCAAAGCCAGATTAATCAAATTCGGAATGGTATTGACATCCTTGTTGGGACCCCAGGGCGTAT
CAAAGACCATCTGCAAAGTGGCCGTTTGGATCTTTCAAAGCTACGCCATGTTGTGCTTGATGAAGTAGATCAAATGTTAG
ATTTAGGTTTTGCTGAACAAGTCGAAGATATTATTCATGAATCTTACAAAACTGATTCGGAAGACAATCCTCAGACCTTA
CTTTTTTCTGCAACTTGCCCACAGTGGGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATACGAACAGGTTGACCT
TGTTGGAAAAATGACTCAAAAAGCTGCAACCACTGTGGAACATTTGGCTATCCAGTGCCATTGGTCTCAGAGACCAGCAG
TTATTGGAGATGTCCTTCAGGTCTACAGTGGGTCTGAAGGGAGAGCTATTATCTTCTGTGAAACTAAGAAGAATGTTACT
GAAATGGCCATGAATCCACACATAAAGCAGAATGCTCAGTGTTTGCATGGAGACATTGCACAGTCACAAAGAGAAATTAC
CTTGAAAGGCTTCAGAGAAGGTAGTTTTAAAGTTTTGGTAGCAACCAATGTGGCTGCTCGTGGCTTGGACATTCCTGAGG
TTGACCTAGTGATTCAGAGTTCTCCTCCACAGGATGTTGAATCCTATATCCATCGCTCTGGACGCACAGGTAGAGCTGGC
CGGACAGGAATTTGTGTATGTTTTTATCAACCAAGGGAAAGAGGTCAACTGAGATATGTGGAGCAGAAAGCTGGAATTAC
TTTTAAACGTGTAGGTGTTCCGTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTCTGGCTTCTG
TTTCTTATGCTGCTGTTGATTTTTTCCGACCATCAGCTCAAAGACTGATAGAAGAGAAGGGGGCAGTGGATGCATTGGCT
GCAGCATTAGCTCACATTTCTGGTGCATCAAGCTTTGAACCACGATCTTTGATAACTTCTGATAAGGGGTTTGTGACCAT
GACTCTGGAGAGCCCAGAAGAAATACAGGATGTCAGCTGCGCTTGGAAGGAACTTAACAGAAAGCTCAGTAGTAATGCTG
TGTCTCACGTAACCAGAATGTGCCTCCTGAAAGGAAATATGGGTGTTTGCTTTGATGTTCCTACAAGTGAGTCAGAAAGA
TTACAGGCAGAGTGGCATGATTCAGACTGGATACTCTCAGTGCCAGCCAAATTACCTGAAATTGAAGAATATTATGATGG
AAACACATCATCTAATCCCAGACAGAGGAGCGGCTGGTCTGGCGGCAGGTCAGGCCGTTCAGGACGGTCTGGTGGTCGAT
CTGGTGGCCGATCAGGTAGACAGAGTCGACAGGGAAGTCGGTCAGGAAGTCGGCAAGATGGTAGAAGACGAAGTGGGAAC
AGAAATCGATCAAGAAGTGGGGGCCATAAACGGAATTTTGACTGA

Library Parental gene expression (RPM)
SRP007412_brain 50 .14 RPM
SRP007412_cerebellum 41 .16 RPM
SRP007412_heart 32 .06 RPM
SRP007412_kidney 46 .33 RPM
SRP007412_liver 41 .81 RPM
SRP007412_testis 54 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018844 ortholog_one2one 1 retrogene
retro_cjac_1298,
Homo sapiens ENSG00000107625 ortholog_one2one 2 retrogenes
retro_hsap_2089, retro_hsap_2866,
Macaca mulatta ENSMMUG00000001006 ortholog_one2one 1 retrogene
retro_mmul_982,
Mus musculus ENSMUSG00000020075 within_species_paralog 2 retrogenes
retro_mmus_582, retro_mmus_662,
Mus musculus ENSMUSG00000020719 other_paralog 1 retrogene
retro_mmus_788,
Nomascus leucogenys ENSNLEG00000011631 ortholog_one2one 2 retrogenes
retro_nleu_1300, retro_nleu_609,
Otolemur garnettii ENSOGAG00000001844 ortholog_one2one 2 retrogenes
retro_ogar_1492, retro_ogar_555,
Pongo abelii ENSPPYG00000002390 ortholog_one2one 3 retrogenes
retro_pabe_2007, retro_pabe_2369, retro_pabe_2418,
Pan troglodytes ENSPTRG00000002562 ortholog_one2one 2 retrogenes
retro_ptro_1536, retro_ptro_1938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_3362 92.17 83.24
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Download FASTA sequences of all ENSMUSG00000020076 retrocopies