RetrogeneDB ID:

retro_ogar_555

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873523.1:38182071..38183288(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DDX50
Ensembl ID:ENSOGAG00000001844
Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Source:HGNC Symbol;Acc:17906]


Retrocopy-Parental alignment summary:






>retro_ogar_555
AGGAAGTCAAGGCCCCATTATGACTCAGATGCCAAATCAGAAACAAGAGAAAATGGCACTGTGAATGACTTGGATGCTGC
CAAGCCCAAAAAAGCTAAAATGAAAGAGAAGCTAAATGGAGACGCTGAAGAAGGATTTAATAGACTTTCAGATGAATTCT
CTAAATCTCATAAGTCAAGAAGAAAAGATCTACCAAATGGAGATATTGATGAATATGAAAAAAATCAAAATGAGTATCAC
ACTTAGATAGTTCTACTTATAAATCAAGTGACAATAAACTGGAGGAGACTCTAACATGTGAAGATCAAGAAGGAGCCTTC
TCAAATTTTCCTATCTCTGAAGAAACTATAAAGCTTCTGAAAGGTCAAGGGGTAACATATTTCTGTCCTATTCAAGTTAA
GACCTTTGGTCTTGCCTATGAAGGAAAAGATTTAATAGCTCAAGGATGAACCGCCAAAGGAAAGATATTCTCTTTTGCCA
TCCCCTTGATTGAAAGTCTCCAAAGAAATCAAGAAATAATTTTAAAAAGCTGCTCACCAAAGGTACTTGTTTTGGCTCCA
GCAAGGGAACTGGCAACCCAAGTAGCCAAAGACTTCAAATATATAACTAGGCAGCTCAGGGTGGCATGTTTTTATGGTGG
AACACCATATCAAAGCCAAATTAATCATATTTGAAATGGTATTGACATCCTGGTTGGGACCCCTGGTCATATCAAAGACC
ATGTGCAGAACAACTGATTGGATCTTTCTAAACTGCACCATGTCATGTTTGATGAAATGGATCAGATGTTAGATTTAGGT
TTTGCTGAGCAAGTTGAAGATATTATTTATGAATCCTACAAAACTGATTCTGAAGACAATCCTCAGACTTTACTTTATTC
TTTAACTTGCCCACAATGGGTATATAAAGTTGCAAAAAAAAAAAAAAAATACCCGAAATCCAGATATGAACAAGTTGACC
TTGTTGGAAAAATGACTCAAAAGGCTACAACTACTATGGGACATTTGGCCATCCAGTGTCATTGGTCTCAGAGATCAGGA
GTTACTGGACATGTCCTTCGAGTCTACAGTGGGTCTCAAAGGAGGGCTATCATTTTTTGTGAGACCAAGAAAAAAGTAAC
TGAAATGGCCATGAATCCACACATAAAACAGGATGCCCAGTGTTTACATGCAGACATTGCACAATCACAAAGAGAAATTA
CACTGAAAGGCTTTCAG

ORF - retro_ogar_555 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.29 %
Parental protein coverage: 54.68 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRKSRHHYDSDEKSETRENGVVNDLDAPKPKKAKMKEKLNGDAEEGFNRLSDEFSKSHKSRRKDLPNGDID
RKSR.HYDSD.KSETRENG.VNDLDA.KPKKAKMKEKLNGDAEEGFNRLSDEFSKSHKSRRKDLPNGDID
RetrocopyRKSRPHYDSDAKSETRENGTVNDLDAAKPKKAKMKEKLNGDAEEGFNRLSDEFSKSHKSRRKDLPNGDID
ParentalEYEK-KSKRISSLDSSTHKSNDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPV
EYEK.KSK..S.LDSST.KS.DNKLEETLT.E..EGAFSNFPISEETIKLLKG.GVTY..PIQVKTFG..
RetrocopyEYEK<KSK*VSHLDSSTYKSSDNKLEETLTCEDQEGAFSNFPISEETIKLLKGQGVTYFCPIQVKTFGLA
ParentalYEGKDLIAQARTGTGKTFSFAIPLIERLQRSQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVA
YEGKDLIAQ..T..GK.FSFAIPLIE.LQR.QE.I.KS.SPKVLVLAP.RELA.QVAKDFK.ITR.L.VA
RetrocopyYEGKDLIAQG*TAKGKIFSFAIPLIESLQRNQEIILKSCSPKVLVLAPARELATQVAKDFKYITRQLRVA