Parental gene:

DDX50, ENSMMUG00000001006

Aliases:None
Description:ATP-dependent RNA helicase DDX50 [Source:RefSeq peptide;Acc:NP_001245111]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:9:68077150..68124015(-)


>ENSMMUG00000001006
ATGCCTGGGAAACTCCTGTGGGGGGACATTATGGAGCTGGAAGCACCCTTGGAGGAGTCCGAGAGCCAGAAGAAGGAGAG
GCAAAAGAGTGACAGAAGGAAGTCAAGGCACCATTATGACTCAGATGAGAAATCAGAAACAAGAGAAAATGGTGTTACAG
ATGACCTGGATGCTCCCAAGGCCAAAAAAACTAAAATGAAAGAGAAGCTAAATGGAGACACTGAAGAAGGATTTAATAGA
CTTTCAGATGAATTCTCTAAATCTCATAAGTCAAGAAGAAAAGATCTACCAAATGGAGATATTGATGAATATGAAAAAAA
ATCAAAGCGAGTATCATCCTTAGATAGTTCTACTCATAAATCAAGTGATAATAAACTAGAGGAGACCTTAACACGTGAAC
AGAAAGAAGGAGCCTTCTCCAATTTTCCTATTTCTGAAGAGACTATAAAGCTTCTGAAAGGTCGAGGGGTAACATATCTC
TTTCCTATTCAAGTTAAGACCTTTGGTCCTGTATATGAAGGAAAAGATTTAATAGCTCAAGCACGGACAGGAACAGGAAA
GACATTCTCTTTTGCCATCCCCTTAATTGAAAGACTCCAAAGAAATCAAGAAACAATTAAAAAAAGCCGCTCACCAAAGG
TACTTGTTTTGGCTCCAACAAGGGAACTGGCAAACCAAGTAGCCAAAGACTTCAAAGATATAACTAGGAAACTCAGTGTG
GCATGTTTTTATGGTGGAACATCATATCAAAGCCAAATTAATCATATTCGAAATGGTATTGACATCTTGGTTGGAACCCC
TGGTCGTATCAAAGACCATCTGCAGAGTGGCCGATTGGATCTTTCTAAACTGCGACATGTTGTGCTTGATGAAGTGGATC
AAATGTTGGATTTAGGTTTTGCTGAACAAGTTGAAGATATTATTCACGAATCCTACAAAACTGATTCTGAAGACAATCCT
CAGACTTTACTTTTTTCTGCAACTTGCCCACAGTGGGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATATGAGCA
GGTTGACCTTGTTGGAAAAATGACTCAAAAGGCTGCAACTACTGTGGAACATTTGGCCATCCAGTGTCATTGGTCTCAGA
GGCCGGCAGTTATTGGAGATGTCCTTCAAGTCTACAGTGGGTCTGAAGGGAGGGCTATTATTTTCTGTGAGACCAAAAAG
AATGTAACTGAAATGGCCATGAATCCACACATAAAACAGAATGCCCAGTGTTTACATGGGGACATTGCACAGTCACAAAG
AGAAATTACACTAAAGGGCTTCAGAGAAGGTAGTTTTAAAGTTTTGGTGGCAACCAATGTGGCTGCCCGTGGTTTGGACA
TTCCTGAAGTTGACCTGGTGATTCAAAGTTCTCCTCCTCAGGATGTTGAGTCCTATATCCATCGCTCTGGACGCACAGGT
AGAGCTGGACGGACAGGGATTTGTATATGTTTTTATCAACCAAGAGAAAGAGGTCAACTAAGATATGTGGAACAAAAAGC
AGGAATTACTTTTAAACGTGTAGGTGTTCCTTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTC
TGGCTTCCGTTTCTTATGCTGCTGTTGATTTTTTCCGACCATCAGCTCAGAGACTGATAGAAGAGAAAGGGGCAGTGGAT
GCATTGGCTGCAGCTTTAGCCCACATTTCTGGTGCATCAAGCTTCGAACCACGATCTTTGATCACCTCTGATAAGGGATT
TGTGACCATGACTCTGGAAAGCCTAGAGGAAATACAGGATGTCAGCTGTGCTTGGAAAGAACTTAACAGAAAGCTGAGTA
GTAATGCAGTGTCTCAGATTACCAGAATGTGCCTCCTGAAAGGAAATATGGGTGTTTGCTTTGATGTTCCCACAACTGAG
TCAGAAAGGTTACAGGCAGAGTGGCATGATTCCGACTGGATACTCTCAGTGCCAGCCAAATTACCTGAAATTGAAGAATA
TTATGATGGAAACACATCTTCTAATTCCAGACAGAGGAGTGGCTGGTCAAGTGGTCGATCGGGCCGGTCAGGCCGGTCAG
GTGGTCGATCTGGTGGCCGGTCAGGTAGACAGAGTCGACAAGGGAGTCGCTCAGGAAGTCGACAAGATGGTAGAAGACGA
AGTGGGAATAGGAATCGATCAAGAAGTGGGGGCCACAAACGGAGTTTTGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 17 .06 RPM
SRP007412_brain 26 .22 RPM
SRP007412_cerebellum 39 .33 RPM
SRP007412_heart 19 .84 RPM
SRP007412_kidney 26 .53 RPM
SRP007412_liver 12 .27 RPM
SRP007412_testis 42 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018844 ortholog_one2one 1 retrogene
retro_cjac_1298,
Homo sapiens ENSG00000107625 ortholog_one2one 2 retrogenes
retro_hsap_2089, retro_hsap_2866,
Mus musculus ENSMUSG00000020076 ortholog_one2one 1 retrogene
retro_mmus_3362,
Nomascus leucogenys ENSNLEG00000011631 ortholog_one2one 2 retrogenes
retro_nleu_1300, retro_nleu_609,
Otolemur garnettii ENSOGAG00000001844 ortholog_one2one 2 retrogenes
retro_ogar_1492, retro_ogar_555,
Pongo abelii ENSPPYG00000002390 ortholog_one2one 3 retrogenes
retro_pabe_2007, retro_pabe_2369, retro_pabe_2418,
Pan troglodytes ENSPTRG00000002562 ortholog_one2one 2 retrogenes
retro_ptro_1536, retro_ptro_1938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_982 88.70 62.28
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Download FASTA sequences of all ENSMMUG00000001006 retrocopies