Parental gene: | RPS16, ENSMMUG00000019370 |
| Aliases: | None |
| Description: | 40S ribosomal protein S16 [Source:RefSeq peptide;Acc:NP_001252707] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 19:45779641..45782448(-) |
>ENSMMUG00000019370
ATGCCGTCCAAGGGCCCGCTGCAGTCGGTACAGGTCTTCGGACGCAAGAAGACAGCCACAGCGGTGGCGCACTGCAAACG
CGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAATACAAGCTGCTGGAGC
CAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTGGACATCCGTGTCCGTGTGAAGGGTGGTGGTCACGTGGCCCAG
ATTTATGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGA
GATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAGCTGATCCTCGTCGCTGCGAGTCCAAAAAGTTTGGAG
GCCCTGGTGCCCGTGCTCGCTACCAGAAATCCTACCGATAA
ATGCCGTCCAAGGGCCCGCTGCAGTCGGTACAGGTCTTCGGACGCAAGAAGACAGCCACAGCGGTGGCGCACTGCAAACG
CGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAATACAAGCTGCTGGAGC
CAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTGGACATCCGTGTCCGTGTGAAGGGTGGTGGTCACGTGGCCCAG
ATTTATGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGA
GATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAGCTGATCCTCGTCGCTGCGAGTCCAAAAAGTTTGGAG
GCCCTGGTGCCCGTGCTCGCTACCAGAAATCCTACCGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 101 .07 RPM |
| SRP007412_brain | 21 .63 RPM |
| SRP007412_cerebellum | 23 .51 RPM |
| SRP007412_heart | 73 .96 RPM |
| SRP007412_kidney | 45 .54 RPM |
| SRP007412_liver | 143 .10 RPM |
| SRP007412_testis | 22 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000014176 | ortholog_one2many | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000008470 | ortholog_one2many | 8 retrogenes | |
| Bos taurus | ENSBTAG00000021093 | ortholog_many2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000005501 | possible_ortholog | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014170 | ortholog_one2many | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000011359 | ortholog_one2many | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000001527 | possible_ortholog | 3 retrogenes | |
| Equus caballus | ENSECAG00000004311 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015290 | possible_ortholog | 4 retrogenes | |
| Felis catus | ENSFCAG00000010743 | possible_ortholog | 4 retrogenes | |
| Homo sapiens | ENSG00000105193 | ortholog_one2many | 11 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014414 | possible_ortholog | 10 retrogenes | |
| Loxodonta africana | ENSLAFG00000001541 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010380 | possible_ortholog | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000006110 | possible_ortholog | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000029089 | ortholog_one2many | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000013545 | ortholog_one2many | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017722 | ortholog_one2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000037563 | ortholog_one2many | 11 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014388 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000002150 | possible_ortholog | 14 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004497 | possible_ortholog | 4 retrogenes | |
| Oreochromis niloticus | ENSONIG00000000006 | ortholog_one2many | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000016930 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010970 | possible_ortholog | 11 retrogenes | |
| Rattus norvegicus | ENSRNOG00000019578 | ortholog_one2many | 3 retrogenes | |
| Sorex araneus | ENSSARG00000000852 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000010712 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000020817 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006794 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000005241 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003571 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_20 | 97.93 | 99.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_767 | 72.50 | 54.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmul_862 | 97.20 | 97.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmul_1018 | 75.51 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmul_1080 | 70.00 | 54.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmul_1175 | 70.30 | 67.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmul_1219 | 64.71 | 58.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_mmul_1403 | 89.04 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000019370 retrocopies