Parental gene:

MMU.1947, ENSMMUG00000012053

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:5:176728736..176737895(-)


>ENSMMUG00000012053
ATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAGTTTGGAACCAAAAATCATACATGGAAGCAAATCAGT
GGACTCTGGAATATCCCTGGAAAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATAATTAATAATAAGA
ATTTTCATAAAAGCACTGGAATGGCATCTCGGTCTGGTACAGATGTTGATGCAGCAAACCTCAGGGAAACATTCATAAAC
TTGAAATACGAAGTCAGGAATAAAAACGATCTTACACGTGAAGAAATTGTGGAATTGATGCGTAATGTTTCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTTGTTTGTGTGCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTC
TTGACCTGAAAAAAATTACAAGCTTTTTCAGAGGGGATTGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGCACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGAGGATGACATGGCGTGTCATAAAAT
CCCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAGGATGGCTCCT
GGTTCATCCAGTCGCTTTGTGCCATGCTGAAACAGTACGCCGACAAGCTTGAATTTATGCACATTCTTACCCGGGTTAAC
CGAAAGGTGGCAACAGAATTTGAGTCCTTTTCCCTTGATGCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTTTC
CATGCTCACAAAAGAACTGTATTTTTATCACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .08 RPM
SRP007412_brain 7 .40 RPM
SRP007412_cerebellum 6 .20 RPM
SRP007412_heart 2 .94 RPM
SRP007412_kidney 3 .05 RPM
SRP007412_liver 1 .98 RPM
SRP007412_testis 1 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005740 ortholog_one2one 2 retrogenes
retro_cjac_2678, retro_cjac_3011,
Cavia porcellus ENSCPOG00000012511 possible_ortholog 2 retrogenes
retro_cpor_1203, retro_cpor_1450,
Dasypus novemcinctus ENSDNOG00000013931 ortholog_many2many 1 retrogene
retro_dnov_1013,
Dipodomys ordii ENSDORG00000002554 ortholog_one2one 2 retrogenes
retro_dord_178, retro_dord_620,
Homo sapiens ENSG00000164305 ortholog_one2one 1 retrogene
retro_hsap_406,
Gorilla gorilla ENSGGOG00000025155 ortholog_one2one 1 retrogene
retro_ggor_402,
Microcebus murinus ENSMICG00000004809 possible_ortholog 2 retrogenes
retro_mmur_1389, retro_mmur_691,
Nomascus leucogenys ENSNLEG00000010895 ortholog_one2one 1 retrogene
retro_nleu_1005,
Otolemur garnettii ENSOGAG00000005985 possible_ortholog 2 retrogenes
retro_ogar_1756, retro_ogar_3263,
Pongo abelii ENSPPYG00000015236 ortholog_one2one 1 retrogene
retro_pabe_312,
Pan troglodytes ENSPTRG00000016640 ortholog_one2one 1 retrogene
retro_ptro_310,
Rattus norvegicus ENSRNOG00000010475 ortholog_many2many 1 retrogene
retro_rnor_2747,
Sarcophilus harrisii ENSSHAG00000009178 ortholog_many2many 1 retrogene
retro_shar_404,
Ictidomys tridecemlineatus ENSSTOG00000003865 possible_ortholog 2 retrogenes
retro_itri_172, retro_itri_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_114 93.20 53.07
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Download FASTA sequences of all ENSMMUG00000012053 retrocopies