RetrogeneDB ID: retro_mmur_691

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4664:201234..201764(-)
• Located in intron of: ENSMICG00000008808

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CASP3
• Ensembl ID: ENSMICG00000004809
• Aliases: None
• Description: caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1504]

Sequence

>retro_mmur_691
TTGATGCATAACGTTTCTAAAGAAGATCACAGCAAAAGGAGCAGTTTTATTTGCGTGCTTCTAAGCCATGGTGAGGAAGG
AATAATTTTGGGGACAAATGGACCTGTTGACCTAAAAAAATAACAAGTTTCTTCAGAGGGGATTATTGTAGAAGTCTGAC
TGGAAAACCCAAACTTTTCATTATTCAGGCCTGCCGAGGTACTGAACTGGACTGTGGCATTGAGACAGACAGCAGTGCGG
ATGATGACATAGCGTGTCAGAAAATACCAGTCGAGGTCGACTTCTTGTACTCCACAGCACCTGGTTATTATTCCTGGCGA
AATTCAAAGGATGGCTCCTGGTTCATCCAGTCACTTTGTGCTAAGCTGAAACTGTACGCTCACAAGCTCGAGTTCATGCA
CATTCTTACTCTGGTTAACCGAAAGGTGGCAACGGAATTTGAGTCCTTTTCCTTGGAAGCTACTTTTCATGCAAAGAAAC
AAATTCCATGTATTGTGTCCATGCTAACAAAAGAATTGTATTTTTATCAC

Alignment

ORF - retro_mmur_691 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.78 %
• Parental protein coverage: 64.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LMHNVSKEDHSKRSSFICVLLSHGEEGIIFGTNGPVDLKK-ITSFFRGDYCRSLTGKPKLFIIQXXXXXE
          LMHNVSKEDHSKRSSFICVLLSHGEEGII.GTNGPVDLKK.ITSFFRGDYCRSLTGKPKLFIIQ.....E
Retrocopy LMHNVSKEDHSKRSSFICVLLSHGEEGIILGTNGPVDLKK<ITSFFRGDYCRSLTGKPKLFIIQACRGTE

Parental  LDCGIETDSSADDDMACQKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKLYAHKLEFMHILT
          LDCGIETDSSADDD.ACQKIPVE.DFLY..STAPGYYSWRNSKDGSWFIQSLCA.LKLYAHKLEFMHILT
Retrocopy LDCGIETDSSADDDIACQKIPVEVDFLY--STAPGYYSWRNSKDGSWFIQSLCAKLKLYAHKLEFMHILT

Parental  RVNRKVATEFESFSLEATFHAKKQIPCIVSMLTKELYFYH
          .VNRKVATEFESFSLEATFHAKKQIPCIVSMLTKELYFYH
Retrocopy LVNRKVATEFESFSLEATFHAKKQIPCIVSMLTKELYFYH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_691 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_691 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000012511	2 retrocopies	retro_cpor_1203, retro_cpor_1450,
Dasypus novemcinctus	ENSDNOG00000013931	1 retrocopy	retro_dnov_1013,
Microcebus murinus	ENSMICG00000004809	2 retrocopies	retro_mmur_1389, retro_mmur_691 ,
Microcebus murinus	ENSMICG00000010297	2 retrocopies	retro_mmur_709, retro_mmur_844,
Macaca mulatta	ENSMMUG00000012053	1 retrocopy	retro_mmul_114,
Otolemur garnettii	ENSOGAG00000005985	2 retrocopies	retro_ogar_1756, retro_ogar_3263,
Rattus norvegicus	ENSRNOG00000010475	1 retrocopy	retro_rnor_2747,
Sarcophilus harrisii	ENSSHAG00000009178	1 retrocopy	retro_shar_404,
Ictidomys tridecemlineatus	ENSSTOG00000003865	2 retrocopies	retro_itri_172, retro_itri_586,