Parental gene: | MMU.12033, ENSMMUG00000005321 |
| Aliases: | None |
| Description: | carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 [Source:RefSeq peptide;Acc:NP_001252987] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 11:54908984..54935564(-) |
>ENSMMUG00000005321
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATTTTCAAGGCCCTTTTCTGCTGTTTTCGTGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCCGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAATTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCATTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAAGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGTATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGATCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCCTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGTAGGGACCTGAGGAAGACCC
TCATCCTGGACAACTCACCTGCTTCTTACATCTTCCACCCTGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACTGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGGC
TGCGGGCCCCTTAGCCTGCCCTGCTTCCAAGCAACGGCCATCCCAGTAG
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATTTTCAAGGCCCTTTTCTGCTGTTTTCGTGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCCGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAATTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCATTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAAGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGTATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGATCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCCTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGTAGGGACCTGAGGAAGACCC
TCATCCTGGACAACTCACCTGCTTCTTACATCTTCCACCCTGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACTGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGGC
TGCGGGCCCCTTAGCCTGCCCTGCTTCCAAGCAACGGCCATCCCAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 120 .90 RPM |
| SRP007412_brain | 95 .69 RPM |
| SRP007412_cerebellum | 154 .79 RPM |
| SRP007412_heart | 125 .90 RPM |
| SRP007412_kidney | 189 .67 RPM |
| SRP007412_liver | 132 .01 RPM |
| SRP007412_testis | 125 .10 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006503 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000175215 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000016742 | within_species_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000078429 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017164 | ortholog_one2one | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000009544 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004711 | ortholog_one2one | 14 retrogenes | |
| Pan troglodytes | ENSPTRG00000005155 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_764 | 75.68 | 51.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_2208 | 72.89 | 57.45 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000005321 retrocopies