Parental gene: | CTDSP2, ENSPTRG00000005155 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:31497299..31525908(+) |
>ENSPTRG00000005155
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACTAAGCAAGGCCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGCGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCTGCATATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCTTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGGAAGACCC
TCATCCTGGACAACTCGCCTGCTTCTTACATATTCCACCCCGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACCGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGCA
GCTGCGGGCCCCTTAG
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACTAAGCAAGGCCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGCGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCTGCATATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCTTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGGAAGACCC
TCATCCTGGACAACTCGCCTGCTTCTTACATATTCCACCCCGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACCGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGCA
GCTGCGGGCCCCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 90 .27 RPM |
| SRP007412_cerebellum | 165 .73 RPM |
| SRP007412_heart | 88 .66 RPM |
| SRP007412_kidney | 227 .94 RPM |
| SRP007412_liver | 101 .87 RPM |
| SRP007412_testis | 63 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006503 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000175215 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005321 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000078429 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017164 | ortholog_one2one | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000009544 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004711 | ortholog_one2one | 14 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2587 | 68.86 | 60.52 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2589 | 70.48 | 60.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2590 | 68.86 | 60.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2592 | 71.69 | 60.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2594 | 68.86 | 60.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2958 | 68.86 | 60.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_3054 | 70.48 | 60.52 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000005155 retrocopies