Parental gene: | ENSCJAG00000006503 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:46655358..46678350(-) |
>ENSCJAG00000006503
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAATC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGTGCCCAGCATGTTGGCCAGTCAA
GTTGCTCCACTGAGCTCGCTGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCAGATCTGCTTCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTGGACGAAACCCTCGTGCACAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATAGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACGGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCCTGCGTGTTTCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGGAAGACTC
TCATCCTGGACAACTCGCCTGCTTCTTACATCTTCCACCCTGAGAATGCAGTGCCTGTGCAGTCTTGGTTTGATGACATG
GCAGACACCGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGGC
TGCGGGCCCCTTAGCCTTCCCTGCTTCCAGGCGATGGCCATCCCAGTAG
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAATC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGTGCCCAGCATGTTGGCCAGTCAA
GTTGCTCCACTGAGCTCGCTGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCAGATCTGCTTCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTGGACGAAACCCTCGTGCACAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATAGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACGGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCCTGCGTGTTTCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGGAAGACTC
TCATCCTGGACAACTCGCCTGCTTCTTACATCTTCCACCCTGAGAATGCAGTGCCTGTGCAGTCTTGGTTTGATGACATG
GCAGACACCGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGGC
TGCGGGCCCCTTAGCCTTCCCTGCTTCCAGGCGATGGCCATCCCAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 63 .30 RPM |
| SRP051959_skeletal_muscle | 87 .02 RPM |
| SRP051959_lymph_node | 49 .70 RPM |
| SRP051959_lung | 76 .15 RPM |
| SRP051959_liver | 43 .54 RPM |
| SRP051959_kidney | 48 .96 RPM |
| SRP051959_heart | 62 .07 RPM |
| SRP051959_colon | 63 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000005618 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002423 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000175215 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005321 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000078429 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017164 | ortholog_one2many | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000009544 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004711 | ortholog_one2many | 14 retrogenes | |
| Pan troglodytes | ENSPTRG00000005155 | ortholog_one2many | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_919 | 90.32 | 91.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3087 | 86.97 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006503 retrocopies