RetrogeneDB - Parental gene ENSMMUG00000003636 details

							
>ENSMMUG00000003636
CCGCGTGCTGTTGTTGGAGGACCCTCCCTGCTTCAGGGTACAGCTCGCAGAAAGAAGAAGGTGGTACACAGAACAGCCAC

AGCTGATGACAAAAAGCTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTATTGAAGAGGTGAACATGA

TTAAAGATGATGGGACAGTTATTCATTTCAACAATCCCAAAGTCCAAGCTTCCCTTTCTGCTAACACCTTTGCAATTACT

GGTCATGCAGAAGCCAAACCAATCACAGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGCTGACAGTTTAACAAGCCT

TAGGAAGTTAGCTGAACAGTTCCCACGGCAAGTCTTGGACAGTAAAGCACCAAAACCAGAAGACATTGATGAGGAGGATG

ATGATGTTCCAGATCTTGTAGAAAATTTTGATGAGGCATCAAAGAATGAAGCTAACTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	23 .88 RPM
SRP007412_brain	29 .47 RPM
SRP007412_cerebellum	24 .73 RPM
SRP007412_heart	11 .72 RPM
SRP007412_kidney	8 .69 RPM
SRP007412_liver	7 .92 RPM
SRP007412_testis	13 .08 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000011025	possible_ortholog	1 retrogene	retro_btau_1030,
Canis familiaris	ENSCAFG00000003782	possible_ortholog	2 retrogenes	retro_cfam_2135, retro_cfam_938,
Callithrix jacchus	ENSCJAG00000021582	ortholog_many2many	4 retrogenes	retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus	ENSCPOG00000004006	ortholog_one2many	1 retrogene	retro_cpor_908,
Ciona savignyi	ENSCSAVG00000009653	ortholog_one2many	1 retrogene	retro_csav_25,
Dasypus novemcinctus	ENSDNOG00000003181	ortholog_one2many	4 retrogenes	retro_dnov_1690, retro_dnov_1928, retro_dnov_2672, retro_dnov_921,
Erinaceus europaeus	ENSEEUG00000004502	ortholog_one2many	3 retrogenes	retro_eeur_215, retro_eeur_447, retro_eeur_456,
Echinops telfairi	ENSETEG00000011923	ortholog_one2many	11 retrogenes	retro_etel_1017, retro_etel_1167, retro_etel_1207, retro_etel_1409, retro_etel_1990, retro_etel_2113, retro_etel_2203, retro_etel_291, retro_etel_663, retro_etel_804, retro_etel_953,
Homo sapiens	ENSG00000134717	ortholog_one2many	3 retrogenes	retro_hsap_2173, retro_hsap_2514, retro_hsap_3669,
Loxodonta africana	ENSLAFG00000016124	ortholog_one2many	3 retrogenes	retro_lafr_206, retro_lafr_769, retro_lafr_947,
Macropus eugenii	ENSMEUG00000006135	ortholog_one2many	10 retrogenes	retro_meug_1114, retro_meug_1164, retro_meug_1333, retro_meug_1395, retro_meug_1512, retro_meug_1663, retro_meug_2008, retro_meug_298, retro_meug_903, retro_meug_966,
Microcebus murinus	ENSMICG00000002807	ortholog_one2many	1 retrogene	retro_mmur_804,
Myotis lucifugus	ENSMLUG00000016884	possible_ortholog	1 retrogene	retro_mluc_912,
Macaca mulatta	ENSMMUG00000022291	within_species_paralog	2 retrogenes	retro_mmul_105, retro_mmul_2424,
Monodelphis domestica	ENSMODG00000000770	ortholog_many2many	2 retrogenes	retro_mdom_33, retro_mdom_992,
Mustela putorius furo	ENSMPUG00000006966	possible_ortholog	2 retrogenes	retro_mputfur_1444, retro_mputfur_924,
Mus musculus	ENSMUSG00000028568	ortholog_one2many	2 retrogenes	retro_mmus_1134, retro_mmus_2743,
Nomascus leucogenys	ENSNLEG00000016041	ortholog_one2many	2 retrogenes	retro_nleu_1439, retro_nleu_521,
Oryctolagus cuniculus	ENSOCUG00000001517	possible_ortholog	3 retrogenes	retro_ocun_1001, retro_ocun_1412, retro_ocun_1912,
Otolemur garnettii	ENSOGAG00000030256	possible_ortholog	2 retrogenes	retro_ogar_2759, retro_ogar_570,
Ochotona princeps	ENSOPRG00000013335	possible_ortholog	2 retrogenes	retro_opri_719, retro_opri_974,
Procavia capensis	ENSPCAG00000006428	ortholog_one2many	3 retrogenes	retro_pcap_129, retro_pcap_307, retro_pcap_373,
Pongo abelii	ENSPPYG00000001353	ortholog_one2many	2 retrogenes	retro_pabe_1850, retro_pabe_3010,
Pan troglodytes	ENSPTRG00000000735	ortholog_one2many	3 retrogenes	retro_ptro_1459, retro_ptro_1658, retro_ptro_2489,
Rattus norvegicus	ENSRNOG00000008512	ortholog_one2many	8 retrogenes	retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,
Sorex araneus	ENSSARG00000003173	possible_ortholog	2 retrogenes	retro_sara_680, retro_sara_690,
Ictidomys tridecemlineatus	ENSSTOG00000006129	possible_ortholog	6 retrogenes	retro_itri_1309, retro_itri_402, retro_itri_459, retro_itri_541, retro_itri_701, retro_itri_810,
Tupaia belangeri	ENSTBEG00000013307	ortholog_one2many	30 retrogenes	retro_tbel_1050, retro_tbel_1052, retro_tbel_1178, retro_tbel_1595, retro_tbel_1642, retro_tbel_1785, retro_tbel_1883, retro_tbel_1924, retro_tbel_2245, retro_tbel_2290, retro_tbel_2532, retro_tbel_2979, retro_tbel_3092, retro_tbel_3100, retro_tbel_3340, retro_tbel_3469, retro_tbel_3483, retro_tbel_3520, retro_tbel_3583, retro_tbel_3598, retro_tbel_3986, retro_tbel_4045, retro_tbel_4278, retro_tbel_4283, retro_tbel_4563, retro_tbel_4623, retro_tbel_539, retro_tbel_701, retro_tbel_98, retro_tbel_991,
Tarsius syrichta	ENSTSYG00000013635	possible_ortholog	3 retrogenes	retro_tsyr_1576, retro_tsyr_1822, retro_tsyr_2045,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_59	97.87	92.76	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000003636 retrocopies

Parental gene:	MMU.2587, ENSMMUG00000003636
Aliases:	None
Description:	transcription factor BTF3 homolog 4 [Source:RefSeq peptide;Acc:NP_001253910]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	1:54894158..54926077(+)

Parental gene:

MMU.2587, ENSMMUG00000003636