Parental gene: | PABPC4, ENSLAFG00000000151 |
| Aliases: | None |
| Description: | None |
| Organism: | Elephant (Loxodonta africana) |
| Coordinates: | scaffold_34:18899136..18912785(-) |
>ENSLAFG00000000151
ATGAACGCTGCAGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTATGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCGGAGCGGGCCCTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGAATCATGTGGTCACAAAGGGATCCCTCTTTGAGAAAATCTGGCGTGGGAAATGTCTTCATCAAGAACCTGGA
CAAATCCATAGATAACAAAGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTATCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTTAAGTCACGCAAAGAGCGGGAAGCAGAGCTTGGAGCCAAAGC
TAAGGAATTCACCAATGTTTATATCAAGAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTGTTCAGCCAGT
TCGGTAAGACCTTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CATGAAGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTCGTAGGCCGTGCACA
GAAGAAAGTTGAACGGCAGGCTGAGTTAAAACGGAAATTTGAGCAGCTGAAACAGGAGCGAATTAGTCGCTATCAGGGGG
TGAACCTTTATATCAAGAACTTGGATGACACCATTGATGATGAGAAGTTGAGGAAAGAGTTTTCTCCTTTTGGGTCAATC
ACGAGCGCTAAGGTGATGTTAGAGGATGGGAGAAGCAAAGGGTTTGGCTTCGTCTGCTTCTCATCCCCTGAAGAGGCAAC
CAAAGCAGTCACTGAGATGAATGGACGCATTGTGGGCTCTAAGCCACTGTACGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAGCGGGTGGCAGGAATGAGAGCACTCCCTGCCAACGCCATCTTAAATCAG
TTTCAGCCTGCAGCTGGTGGTTACTTCGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCGTATTACACACCTAACCA
ACTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
GCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTTCAGAGCTTAGCACCTCGGGCTGCTGTTGCAGCTGCTGCTCCTC
GGGCTGTGGCACCATACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCCGCCATGCAGCCTCTGCAGGCCCCACAGCCT
GCAGTCCACGTGCAGGGGCAGGAGCCCCTGACTGCCTCCATGCTGGCCGCAGCACCCCCACAGGAGCAGAAACAGATGCT
GGGAGAACGTTTGTTCCCGCTCATCCAGACGATGCATTCAAACCTAGCTGGAAAGATTACAGGGATGCTTCTGGAGATAG
ACAACTCTGAGCTTCTGCACATGCTGGAGTCTCCTGAATCTCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
ATGAACGCTGCAGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTATGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCGGAGCGGGCCCTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGAATCATGTGGTCACAAAGGGATCCCTCTTTGAGAAAATCTGGCGTGGGAAATGTCTTCATCAAGAACCTGGA
CAAATCCATAGATAACAAAGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTATCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTTAAGTCACGCAAAGAGCGGGAAGCAGAGCTTGGAGCCAAAGC
TAAGGAATTCACCAATGTTTATATCAAGAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTGTTCAGCCAGT
TCGGTAAGACCTTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CATGAAGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTCGTAGGCCGTGCACA
GAAGAAAGTTGAACGGCAGGCTGAGTTAAAACGGAAATTTGAGCAGCTGAAACAGGAGCGAATTAGTCGCTATCAGGGGG
TGAACCTTTATATCAAGAACTTGGATGACACCATTGATGATGAGAAGTTGAGGAAAGAGTTTTCTCCTTTTGGGTCAATC
ACGAGCGCTAAGGTGATGTTAGAGGATGGGAGAAGCAAAGGGTTTGGCTTCGTCTGCTTCTCATCCCCTGAAGAGGCAAC
CAAAGCAGTCACTGAGATGAATGGACGCATTGTGGGCTCTAAGCCACTGTACGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAGCGGGTGGCAGGAATGAGAGCACTCCCTGCCAACGCCATCTTAAATCAG
TTTCAGCCTGCAGCTGGTGGTTACTTCGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCGTATTACACACCTAACCA
ACTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
GCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTTCAGAGCTTAGCACCTCGGGCTGCTGTTGCAGCTGCTGCTCCTC
GGGCTGTGGCACCATACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCCGCCATGCAGCCTCTGCAGGCCCCACAGCCT
GCAGTCCACGTGCAGGGGCAGGAGCCCCTGACTGCCTCCATGCTGGCCGCAGCACCCCCACAGGAGCAGAAACAGATGCT
GGGAGAACGTTTGTTCCCGCTCATCCAGACGATGCATTCAAACCTAGCTGGAAAGATTACAGGGATGCTTCTGGAGATAG
ACAACTCTGAGCTTCTGCACATGCTGGAGTCTCCTGAATCTCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000017125 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000003081 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000005327 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000009396 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012068 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000003660 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014340 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_lafr_390 | 70.80 | 66.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_lafr_597 | 62.84 | 55.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_lafr_1144 | 66.42 | 85.04 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSLAFG00000000151 retrocopies