Parental gene: | PABPC4, ENSBTAG00000017125 |
| Aliases: | None |
| Description: | polyadenylate-binding protein 4 [Source:RefSeq peptide;Acc:NP_001077193] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 3:107084062..107097489(+) |
>ENSBTAG00000017125
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCTGAGCGGGCCTTGGACACCATGAACTTTGATGTAATTAAGGGAAAG
CCGATCCGGATCATGTGGTCTCAGAGGGATCCGTCTCTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGGAACATTCTGTCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAGGAGGCTGCCGACAAGGCCATCGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTCAAGTCTCGAAAAGAGCGGGAAGCCGAACTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTACATCAAAAACTTTGGGGAAGAGGTTGATGATGAGAATCTGAAAGAGCTATTTAGCCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCACTGGGAAGGTCATTTTCGTTGGCCGTGCACA
AAAGAAAGTGGAGCGGCAGGCCGAGTTAAAGCGAAAATTTGAACAGCTGAAGCAGGAGAGGATTAGTCGCTATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACCATCGATGACGAGAAGTTAAGGAAAGAGTTTTCTCCTTTTGGGTCAATC
ACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAGCAAAGGATTTGGCTTTGTCTGCTTCTCATCCCCTGAAGAGGCAAC
CAAAGCAGTCACAGAGATGAATGGACGCATCGTGGGCTCCAAGCCACTTTATGTCGCTCTGGCCCAGAGAAAGGAGGAGA
GAAAGGCTCACCTGACCAACCAATATATGCAGCGGGTGGCCGGGATGAGGGCACTGCCCGCCAATGCCATCTTAAATCAG
TTTCAGCCTGCAGCTGGGGGCTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATATTACACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTT
GGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTGCAGAACTTAGC
GCCTCGTGCTGCTGTTGCTGCTGCTGCTGCTCCTCGGGCTGTTGCACCTTACAAATATGCCTCCAGCATCCGCAGTCCTC
ACCCGGCCATCCAGCCCCTGCAGGCACCCCAGCCTGCGGTCCACGTGCAGGGGCAGGAGCCGCTGACCGCCTCCATGCTG
GCTGCAGCACCCCCCCAGGAACAGAAGCAGATGCTGGGTGAACGTCTGTTCCCACTCATCCAGACGATGCACTCGAACCT
GGCTGGGAAGATAACTGGGATGCTGCTGGAGATCGACAACTCAGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCTCTCC
GCTCCAAGGTGGATGAGGCTGTGGCGGTCCTTCAGGCTCATCATGCCAAGAAAGAAGCTGCTCAGAAGGTGGGCGCTGTT
GCTGCTGCTACCTCTTAG
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCTGAGCGGGCCTTGGACACCATGAACTTTGATGTAATTAAGGGAAAG
CCGATCCGGATCATGTGGTCTCAGAGGGATCCGTCTCTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGGAACATTCTGTCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAGGAGGCTGCCGACAAGGCCATCGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTCAAGTCTCGAAAAGAGCGGGAAGCCGAACTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTACATCAAAAACTTTGGGGAAGAGGTTGATGATGAGAATCTGAAAGAGCTATTTAGCCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCACTGGGAAGGTCATTTTCGTTGGCCGTGCACA
AAAGAAAGTGGAGCGGCAGGCCGAGTTAAAGCGAAAATTTGAACAGCTGAAGCAGGAGAGGATTAGTCGCTATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACCATCGATGACGAGAAGTTAAGGAAAGAGTTTTCTCCTTTTGGGTCAATC
ACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAGCAAAGGATTTGGCTTTGTCTGCTTCTCATCCCCTGAAGAGGCAAC
CAAAGCAGTCACAGAGATGAATGGACGCATCGTGGGCTCCAAGCCACTTTATGTCGCTCTGGCCCAGAGAAAGGAGGAGA
GAAAGGCTCACCTGACCAACCAATATATGCAGCGGGTGGCCGGGATGAGGGCACTGCCCGCCAATGCCATCTTAAATCAG
TTTCAGCCTGCAGCTGGGGGCTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATATTACACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTT
GGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTGCAGAACTTAGC
GCCTCGTGCTGCTGTTGCTGCTGCTGCTGCTCCTCGGGCTGTTGCACCTTACAAATATGCCTCCAGCATCCGCAGTCCTC
ACCCGGCCATCCAGCCCCTGCAGGCACCCCAGCCTGCGGTCCACGTGCAGGGGCAGGAGCCGCTGACCGCCTCCATGCTG
GCTGCAGCACCCCCCCAGGAACAGAAGCAGATGCTGGGTGAACGTCTGTTCCCACTCATCCAGACGATGCACTCGAACCT
GGCTGGGAAGATAACTGGGATGCTGCTGGAGATCGACAACTCAGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCTCTCC
GCTCCAAGGTGGATGAGGCTGTGGCGGTCCTTCAGGCTCATCATGCCAAGAAAGAAGCTGCTCAGAAGGTGGGCGCTGTT
GCTGCTGCTACCTCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 36 .27 RPM |
| SRP017611_kidney | 74 .92 RPM |
| SRP017611_liver | 54 .59 RPM |
| ERP005899_muscle | 90 .74 RPM |
| ERP005899_liver | 36 .70 RPM |
| SRP030211_testis | 208 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000003081 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000005327 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000009396 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000151 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012068 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000003660 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014340 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_28 | 67.12 | 56.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_656 | 69.78 | 62.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_1492 | 89.06 | 70.70 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000017125 retrocopies