Parental gene: | PABPC4, ENSCHOG00000005327 |
| Aliases: | None |
| Description: | poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557] |
| Organism: | Sloth (Choloepus hoffmanni) |
| Coordinates: | GeneScaffold_1082:3206..15287(-) |
>ENSCHOG00000005327
GAGCGGGCCCTGGACACCATGAACTTTGATGTGATTAAGGGAAAGCCAATCCGAATTATGTGGTCTCAGAGGGATCCCTC
TTTGAGAAAATCTGGTGTAGGAAACGTCTTCATCAAGAACCTGGACAAATCTATAGATAACAAGGCACTTTATGATACTT
TTTCTGCTTTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTC
GAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGATCGGCATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAG
ATTTAAGTCTCGGAAAGAGCGGGAAGCCGAGCTTGGAGCCAAAGCCAAGGAATTCACCAACGTATATATCAAAAACTTTG
GGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCATCCAGTTTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGAT
CCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAACACGAGGATGCCAATAAGGCTGTGGAAGAGATGAA
TGGAAAAGAAATAAGTGGGAAAGTCATATTTGTAGGCCGCGCACAGAAGAAAGTTGAACGGCAGGCTGAGTTAAAACGAA
AATTTGAGCAGCTGAAACAGGAGAGAATTAGTCGATATCAGGGGGTGAATCTCTACATTAAGAACTTGGATGACACCATT
GATGATGAGAAGTTAAGGAAAGAATTTTCTCCTTTTGGATCAATTACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAG
CAAAGGATTTGGCTTTGTCTGCTTCTCATCTCCTGAAGAGGCAACCAAAGCAGTCACTGAAATGAATGGACGCATAGTGG
GCTCCAAGCCACTGTACGTTGCCCTGGCCCAGAGGAAGGAAGAGAGAAAGGCTCACCTTACCAACCAGTATATGCAGCGG
GTAGCAGGAATGCGAGCACTCCCTGCCAATGCCATCTTAAATCAGTTTCAGCCTGCAGCTGGTGGCTACTTTGTGCCGGC
AGTTCCACAGGCTCAGGGAAGTCCTCCATATTACACACCGAACCAGTTAGCACAAATGAGGCCTAAAACAAAAAGGCAAC
AAGGTGGGAGACATCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCACAGCCTGCAGTCCATGTGCAGGGCCAGGAGCCCTTGACCTC
CTCCATGCTGGCTGCAGCACCCCCCGAACAGAAGCAGATGCTGGGAGAACGTTTGTTCCCACTGATCCAAACAATGCATT
CAAACCCAGCTGGAAAGTTTACGGGGATGCTGCTGGAGATCAACAATTCGGAGCTGTTGCACATGCTAGAGTCTCCCAAG
TCCCTCCGCTCCAAGGTGGATGAAGCTGTGGCAGTTCTCCAAGCTCATCATGCCAAGAAGGAAGCTGCCCAGAAGGTGGG
CGCTATTGCTGCTGCTACCTCTTAG
GAGCGGGCCCTGGACACCATGAACTTTGATGTGATTAAGGGAAAGCCAATCCGAATTATGTGGTCTCAGAGGGATCCCTC
TTTGAGAAAATCTGGTGTAGGAAACGTCTTCATCAAGAACCTGGACAAATCTATAGATAACAAGGCACTTTATGATACTT
TTTCTGCTTTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTC
GAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGATCGGCATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAG
ATTTAAGTCTCGGAAAGAGCGGGAAGCCGAGCTTGGAGCCAAAGCCAAGGAATTCACCAACGTATATATCAAAAACTTTG
GGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCATCCAGTTTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGAT
CCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAACACGAGGATGCCAATAAGGCTGTGGAAGAGATGAA
TGGAAAAGAAATAAGTGGGAAAGTCATATTTGTAGGCCGCGCACAGAAGAAAGTTGAACGGCAGGCTGAGTTAAAACGAA
AATTTGAGCAGCTGAAACAGGAGAGAATTAGTCGATATCAGGGGGTGAATCTCTACATTAAGAACTTGGATGACACCATT
GATGATGAGAAGTTAAGGAAAGAATTTTCTCCTTTTGGATCAATTACCAGTGCTAAGGTGATGCTGGAGGATGGGAGAAG
CAAAGGATTTGGCTTTGTCTGCTTCTCATCTCCTGAAGAGGCAACCAAAGCAGTCACTGAAATGAATGGACGCATAGTGG
GCTCCAAGCCACTGTACGTTGCCCTGGCCCAGAGGAAGGAAGAGAGAAAGGCTCACCTTACCAACCAGTATATGCAGCGG
GTAGCAGGAATGCGAGCACTCCCTGCCAATGCCATCTTAAATCAGTTTCAGCCTGCAGCTGGTGGCTACTTTGTGCCGGC
AGTTCCACAGGCTCAGGGAAGTCCTCCATATTACACACCGAACCAGTTAGCACAAATGAGGCCTAAAACAAAAAGGCAAC
AAGGTGGGAGACATCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCACAGCCTGCAGTCCATGTGCAGGGCCAGGAGCCCTTGACCTC
CTCCATGCTGGCTGCAGCACCCCCCGAACAGAAGCAGATGCTGGGAGAACGTTTGTTCCCACTGATCCAAACAATGCATT
CAAACCCAGCTGGAAAGTTTACGGGGATGCTGCTGGAGATCAACAATTCGGAGCTGTTGCACATGCTAGAGTCTCCCAAG
TCCCTCCGCTCCAAGGTGGATGAAGCTGTGGCAGTTCTCCAAGCTCATCATGCCAAGAAGGAAGCTGCCCAGAAGGTGGG
CGCTATTGCTGCTGCTACCTCTTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000017125 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000003081 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000002464 | other_paralog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000006810 | other_paralog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000008178 | within_species_paralog | 1 retrogene | |
| Equus caballus | ENSECAG00000009396 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000151 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012068 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000003660 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014340 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_chof_1150 | 64.40 | 51.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_chof_1182 | 71.18 | 58.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_chof_1274 | 73.35 | 60.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCHOG00000005327 retrocopies