Parental gene:

ENSFCAG00000023243

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:A3:140163078..140169311(-)


>ENSFCAG00000023243
ATGTTCAGTTCGAGCGCGAAGATCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCTGGCATCTCCCAGGTCGT
CTTAAAGGTGGCACAGTATGGGCGTGTGAACTTAAGGTCACGCTGGTGTTCTGTGTTCTTCCTTCAGGAGATCGAAGTTG
GCGGTGGTCGCAAAGCTATCATCATCTTTGTTCCCGTTCCTCAACTGAAGTCTTTCCAGAAAATCCAAGTCCGGCTCGTG
CGTGAGCTGGAGAAAAAGTTCAGTGGGAAGCACGTGGTCTTTATTGCTCAGAGGAGAATTCTGCCTAAGCCAACTCGAAA
AAGCCGTACAAAAAACAAGCAGAAGCGTCCCAGAAGCCGCACTTTGACCGCCGTGCACGACGCGATCCTGGAGGACTTGG
TTTTCCCGAGCGAGATTGTGGGCAAGAGAATCCGTGTGAAACTGGACGGCAGCCGGCTCATAAAGGTTCATTTGGATAAA
GCACAGCAGAACAACGTGGAACACAAGGTGGAAACCTTCTCGGGTGTCTATAAGAAGCTCACGGGCAAGGATGTTAACTT
TGAGTTCCCAGAGTTTCAGTTGTAG

Library Parental gene expression (RPM)
SRP017611_liver 92 .09 RPM
SRP017611_kidney 238 .27 RPM
SRP017611_brain 78 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018435 possible_ortholog 2 retrogenes
retro_amel_391, retro_amel_914,
Bos taurus ENSBTAG00000016224 possible_ortholog 5 retrogenes
retro_btau_1016, retro_btau_1046, retro_btau_1351, retro_btau_448, retro_btau_997,
Canis familiaris ENSCAFG00000003263 possible_ortholog 1 retrogene
retro_cfam_1798,
Cavia porcellus ENSCPOG00000009795 possible_ortholog 2 retrogenes
retro_cpor_1139, retro_cpor_773,
Dasypus novemcinctus ENSDNOG00000013285 possible_ortholog 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Equus caballus ENSECAG00000020253 possible_ortholog 2 retrogenes
retro_ecab_276, retro_ecab_396,
Gorilla gorilla ENSGGOG00000023095 possible_ortholog 13 retrogenes
retro_ggor_2028, retro_ggor_2090, retro_ggor_2161, retro_ggor_218, retro_ggor_2452, retro_ggor_2927, retro_ggor_294, retro_ggor_2965, retro_ggor_3047, retro_ggor_346, retro_ggor_400, retro_ggor_484, retro_ggor_597,
Macaca mulatta ENSMMUG00000011870 possible_ortholog 7 retrogenes
retro_mmul_1831, retro_mmul_1846, retro_mmul_1929, retro_mmul_23, retro_mmul_2403, retro_mmul_2540, retro_mmul_357,
Monodelphis domestica ENSMODG00000014495 ortholog_one2many 2 retrogenes
retro_mdom_662, retro_mdom_810,
Mus musculus ENSMUSG00000061477 possible_ortholog 2 retrogenes
retro_mmus_271, retro_mmus_53,
Nomascus leucogenys ENSNLEG00000015407 possible_ortholog 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Oryctolagus cuniculus ENSOCUG00000008507 possible_ortholog 2 retrogenes
retro_ocun_203, retro_ocun_230,
Ochotona princeps ENSOPRG00000005085 ortholog_one2many 3 retrogenes
retro_opri_1036, retro_opri_415, retro_opri_500,
Pongo abelii ENSPPYG00000025872 possible_ortholog 12 retrogenes
retro_pabe_1033, retro_pabe_1555, retro_pabe_2506, retro_pabe_2982, retro_pabe_2983, retro_pabe_31, retro_pabe_313, retro_pabe_360, retro_pabe_3659, retro_pabe_3803, retro_pabe_499, retro_pabe_524,
Pteropus vampyrus ENSPVAG00000002071 possible_ortholog 7 retrogenes
retro_pvam_1051, retro_pvam_1183, retro_pvam_1330, retro_pvam_1437, retro_pvam_207, retro_pvam_543, retro_pvam_887,
Rattus norvegicus ENSRNOG00000008551 possible_ortholog 2 retrogenes
retro_rnor_39, retro_rnor_391,
Sus scrofa ENSSSCG00000027353 possible_ortholog 5 retrogenes
retro_sscr_136, retro_sscr_137, retro_sscr_240, retro_sscr_364, retro_sscr_956,
Ictidomys tridecemlineatus ENSSTOG00000024830 possible_ortholog 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 possible_ortholog 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_41 72.92 98.97
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2. retro_fcat_1534 69.72 73.20
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Download FASTA sequences of all ENSFCAG00000023243 retrocopies