Parental gene:

FXN, ENSECAG00000019174

Aliases:None
Description:frataxin [Source:HGNC Symbol;Acc:3951]
Organism:Horse (Equus caballus)
Coordinates:23:21540396..21572688(-)


>ENSECAG00000019174
AGTTCGAGCCTCCACTTCCTCAGCCAGATTCTGAATGTCAAAAAGCAGAGTGTCTGTGTGATGCATTTGAGGACAACGGG
GACTTTGGGTGACCCGGGTTCTCTGGATGAGACCACCTACGAAAGACTGGCAGAGGAGACGCTGGACTCCTTAGCAGAGT
TTTTTGAAGACCTTGCAGATAAACCTTACACGTTTGAAGACTATGATGTCTCCTTTGGGAGTGGTGTTTTAACAATTAAA
ATGGGTGGAGATCTGGGAACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGTTATCTTCACCATCCAGTGG
ACCCAAGCGTTACGACTGGACGGGGAAAAACTGGGTGTACTCCCACGACGGCGTGTCTCTCCACGAACTACTGGCCGCGG
AGCTGACTAAGGCCTTAAAAACCAAGTTGGACTTGTCTTCCCTGGCCTATTCTGGAAAAGGCACCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 6 .53 RPM
SRP021940_embryo 12 .91 RPM
SRP021940_cerebellum 16 .15 RPM
SRP021940_testis 5 .44 RPM
SRP021940_placental_villous 4 .96 RPM
SRP021940_articular_cartilage 3 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006915 ortholog_one2one 1 retrogene
retro_amel_1496,
Choloepus hoffmanni ENSCHOG00000005107 ortholog_one2one 2 retrogenes
retro_chof_349, retro_chof_94,
Callithrix jacchus ENSCJAG00000001695 ortholog_one2one 4 retrogenes
retro_cjac_1562, retro_cjac_1927, retro_cjac_3939, retro_cjac_813,
Dasypus novemcinctus ENSDNOG00000024066 ortholog_one2one 3 retrogenes
retro_dnov_2204, retro_dnov_2317, retro_dnov_307,
Homo sapiens ENSG00000165060 ortholog_one2one 2 retrogenes
retro_hsap_1447, retro_hsap_4311,
Gorilla gorilla ENSGGOG00000007636 ortholog_one2one 3 retrogenes
retro_ggor_1112, retro_ggor_2203, retro_ggor_2881,
Macaca mulatta ENSMMUG00000000357 ortholog_one2many 2 retrogenes
retro_mmul_2038, retro_mmul_826,
Mustela putorius furo ENSMPUG00000009619 ortholog_one2one 2 retrogenes
retro_mputfur_501, retro_mputfur_803,
Mus musculus ENSMUSG00000059363 ortholog_one2one 2 retrogenes
retro_mmus_1571, retro_mmus_3058,
Otolemur garnettii ENSOGAG00000031105 ortholog_one2many 2 retrogenes
retro_ogar_1865, retro_ogar_476,
Rattus norvegicus ENSRNOG00000015213 ortholog_one2one 1 retrogene
retro_rnor_2276,
Tursiops truncatus ENSTTRG00000010336 ortholog_one2one 4 retrogenes
retro_ttru_1281, retro_ttru_175, retro_ttru_546, retro_ttru_831,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_311 65.48 54.19
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Download FASTA sequences of all ENSECAG00000019174 retrocopies