Parental gene:

FAM60A, ENSECAG00000009655

Aliases:None
Description:family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702]
Organism:Horse (Equus caballus)
Coordinates:6:55501702..55513274(-)


>ENSECAG00000009655
ATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATTTGCAGAGCGAAGTCCTCCAGTTCTCG
ATTCACTGATAGTAAACGCTATGAAAAGGACTTCCAGAGCTGCTTTGGGTTGCATGAGACTCGCTCAGGAGACATCTGCA
ATGCCTGTGTGCTGCTCGTGAAAAGATGGAAGAAATTGCCAGCAGGATCGAAAAAAAACTGGAATCATGTGGTAGATGCA
AGAGCAGGACCCAGTCTAAAGACTACATTGAAACCAAAGAAAGTGAAAACTCTGTCTGGAAACAGGATAAAAAGCAACCA
GATCAGTAAACTACAGAAGGAATTTAAACGTCACAATTCTGATGCTCACAGTACCACCTCAAGTGCCTCCCCCGCTCAGT
CTCCTTGTTACAGTAACCAGTCAGATGATGGCTCTGATACAGAGATGGCTTCTGGCTCTAACAGAACACCAGTTTTTTCC
TTTTTAGATCTCACATACTGGAAAAGACAGAAAATATGTTGTGGGATTATCTATAAAGGCCGTTTTGGGGAAGTCCTCAT
TGACACACATCTCTTCAAGCCTTGCTGCAGCAACAAGAAAGCAGCCGCCGAGAAGCCGGAGGAGCAGCGCCCCGAGCCTC
TGCCCCTGCCCCCTCAGGAGTGGTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 1 .95 RPM
SRP021940_embryo 15 .16 RPM
SRP021940_cerebellum 0 .42 RPM
SRP021940_testis 1 .47 RPM
SRP021940_placental_villous 7 .60 RPM
SRP021940_articular_cartilage 0 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010685 possible_ortholog 4 retrogenes
retro_cfam_1120, retro_cfam_1552, retro_cfam_1692, retro_cfam_1837,
Callithrix jacchus ENSCJAG00000001215 possible_ortholog 3 retrogenes
retro_cjac_1072, retro_cjac_3154, retro_cjac_3289,
Dasypus novemcinctus ENSDNOG00000016873 ortholog_one2one 2 retrogenes
retro_dnov_1674, retro_dnov_2668,
Erinaceus europaeus ENSEEUG00000012617 ortholog_one2one 2 retrogenes
retro_eeur_350, retro_eeur_372,
Echinops telfairi ENSETEG00000002888 ortholog_one2one 2 retrogenes
retro_etel_1087, retro_etel_427,
Felis catus ENSFCAG00000008955 possible_ortholog 4 retrogenes
retro_fcat_1311, retro_fcat_1339, retro_fcat_58, retro_fcat_965,
Microcebus murinus ENSMICG00000003460 ortholog_one2one 2 retrogenes
retro_mmur_1176, retro_mmur_409,
Otolemur garnettii ENSOGAG00000008927 possible_ortholog 4 retrogenes
retro_ogar_1253, retro_ogar_1762, retro_ogar_2117, retro_ogar_251,
Rattus norvegicus ENSRNOG00000046048 possible_ortholog 1 retrogene
retro_rnor_2858,
Rattus norvegicus ENSRNOG00000049943 possible_ortholog 2 retrogenes
retro_rnor_1121, retro_rnor_2917,
Sarcophilus harrisii ENSSHAG00000006261 ortholog_one2one 1 retrogene
retro_shar_670,
Ictidomys tridecemlineatus ENSSTOG00000007097 possible_ortholog 1 retrogene
retro_itri_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_287 82.16 82.81
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2. retro_ecab_385 64.56 91.40
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Download FASTA sequences of all ENSECAG00000009655 retrocopies