Parental gene:

FAM60A, ENSDNOG00000016873

Aliases:None
Description:family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3537:3250..18406(-)


>ENSDNOG00000016873
GCCGGACGCTATGAAAAGGACTTCCAGAGCTGTTTTGAGCTGCAGGAGGCTCGCGCAGGAGACATCTGCAATGCCTGTGT
CCTGCTCGTGAAGAGATGGAAGAAGCTGCCCGCAGGGTCCAAGAAAAACTGGAATCATGTGGTAGACGCAAGGGCAGGAC
CCAGTCTAAAGACTACATTGAAACCAAAGAAAGTGAAAACTCTATCTGGAAACAGAATGAAAAGCAACCAGATCAGTAAA
CTGCAGAAAGAATTTAAACGTCACAATTCTGATGCTCACAGTACCACCTCAAGTGCCTCCCCAGCCCAGTCCCCTTGTTA
CAGTAACCAGTCAGATGAGGGCTCGGACACAGAGATGGCCTCTGGCTCCAGCAGAACACCAGTTTTTTCCTTTTTAGATC
TCACATACTGGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGAAGCGAGAGGAGAGGGTGGAGCCGTTGCCCATCCAGAG
ATTGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 2 .14 RPM
SRP012922_cerebellum 0 .00 RPM
SRP012922_heart 0 .93 RPM
SRP012922_kidney 1 .37 RPM
SRP012922_liver 2 .32 RPM
SRP012922_lung 8 .09 RPM
SRP012922_quadricep_muscle 0 .52 RPM
SRP012922_spleen 3 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010685 possible_ortholog 4 retrogenes
retro_cfam_1120, retro_cfam_1552, retro_cfam_1692, retro_cfam_1837,
Callithrix jacchus ENSCJAG00000001215 possible_ortholog 3 retrogenes
retro_cjac_1072, retro_cjac_3154, retro_cjac_3289,
Equus caballus ENSECAG00000009655 ortholog_one2one 2 retrogenes
retro_ecab_287, retro_ecab_385,
Erinaceus europaeus ENSEEUG00000012617 ortholog_one2one 2 retrogenes
retro_eeur_350, retro_eeur_372,
Echinops telfairi ENSETEG00000002888 ortholog_one2one 2 retrogenes
retro_etel_1087, retro_etel_427,
Felis catus ENSFCAG00000008955 possible_ortholog 4 retrogenes
retro_fcat_1311, retro_fcat_1339, retro_fcat_58, retro_fcat_965,
Microcebus murinus ENSMICG00000003460 ortholog_one2one 2 retrogenes
retro_mmur_1176, retro_mmur_409,
Otolemur garnettii ENSOGAG00000008927 possible_ortholog 4 retrogenes
retro_ogar_1253, retro_ogar_1762, retro_ogar_2117, retro_ogar_251,
Rattus norvegicus ENSRNOG00000046048 possible_ortholog 1 retrogene
retro_rnor_2858,
Rattus norvegicus ENSRNOG00000049943 possible_ortholog 2 retrogenes
retro_rnor_1121, retro_rnor_2917,
Sarcophilus harrisii ENSSHAG00000006261 ortholog_one2one 1 retrogene
retro_shar_670,
Ictidomys tridecemlineatus ENSSTOG00000007097 possible_ortholog 1 retrogene
retro_itri_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1674 97.79 72.34
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2. retro_dnov_2668 78.10 71.81
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Download FASTA sequences of all ENSDNOG00000016873 retrocopies