Parental gene:

SET, ENSECAG00000009117

Aliases:None
Description:SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Organism:Horse (Equus caballus)
Coordinates:25:31877026..31880363(+)


>ENSECAG00000009117
CTTGCAGAAAAAGAACAGCAGGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAAGC
CAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTTTTTCAGAAGAGGTCGGAATTGATCG
CCAAAATCCCAAATTTTTGGGTAACAACATTTGTCAACCATCCACAAGTGTCTGCGTTGCTTGGGGAGGAGGATGAAGAG
GCACTGCATTATTTGACAAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTTATTTTGA
TGAAAACCCTTACTTCGAAAATAAAATTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATCCGTCTTCAAAGTCCA
CTGAAATCAAATGGAAATCTGGAAAGGATTTGACGAAACGTTCAAGTCAAACACAGAATAAAGCCAGCAGGAAGAGACAG
CATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTGCAGATGAGTTAGGAGAGGTTATCAA
AGATGATATTTGGCCAAATCCATTACAGTACTATTTGGTTCCTGACATGGATGATGAGGAAGGGGAAGGAGAAGAAGATG
ACGACGACGATGAGGAAGAAGAAGGATTAGAAGATATCGATGAAGAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGAT
GATGATGAGGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 54 .90 RPM
SRP021940_embryo 174 .00 RPM
SRP021940_cerebellum 73 .48 RPM
SRP021940_testis 43 .03 RPM
SRP021940_placental_villous 70 .39 RPM
SRP021940_articular_cartilage 51 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015686 ortholog_one2one 7 retrogenes
retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus ENSBTAG00000020959 ortholog_one2one 8 retrogenes
retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Canis familiaris ENSCAFG00000032728 possible_ortholog 2 retrogenes
retro_cfam_47, retro_cfam_83,
Felis catus ENSFCAG00000005848 possible_ortholog 2 retrogenes
retro_fcat_130, retro_fcat_89,
Myotis lucifugus ENSMLUG00000014291 possible_ortholog 13 retrogenes
retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Mustela putorius furo ENSMPUG00000013069 possible_ortholog 10 retrogenes
retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Mus musculus ENSMUSG00000054766 ortholog_one2one 17 retrogenes
retro_mmus_1366, retro_mmus_1435, retro_mmus_1671, retro_mmus_1743, retro_mmus_2329, retro_mmus_2448, retro_mmus_2484, retro_mmus_2664, retro_mmus_2665, retro_mmus_3015, retro_mmus_3290, retro_mmus_345, retro_mmus_3513, retro_mmus_517, retro_mmus_887, retro_mmus_929, retro_mmus_967,
Nomascus leucogenys ENSNLEG00000017595 possible_ortholog 2 retrogenes
retro_nleu_108, retro_nleu_870,
Oryctolagus cuniculus ENSOCUG00000007501 possible_ortholog 12 retrogenes
retro_ocun_1107, retro_ocun_1110, retro_ocun_1234, retro_ocun_1311, retro_ocun_1563, retro_ocun_276, retro_ocun_407, retro_ocun_421, retro_ocun_423, retro_ocun_476, retro_ocun_859, retro_ocun_923,
Otolemur garnettii ENSOGAG00000007635 possible_ortholog 13 retrogenes
retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii ENSPPYG00000019659 possible_ortholog 17 retrogenes
retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,
Ictidomys tridecemlineatus ENSSTOG00000010546 possible_ortholog 6 retrogenes
retro_itri_1204, retro_itri_1588, retro_itri_477, retro_itri_529, retro_itri_603, retro_itri_876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_358 85.00 70.20
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2. retro_ecab_417 64.62 74.90
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3. retro_ecab_505 54.23 55.29
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4. retro_ecab_675 65.50 88.24
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Download FASTA sequences of all ENSECAG00000009117 retrocopies