RetrogeneDB ID:

retro_ogar_465

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873521.1:49344600..49345164(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000007635
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_465
CCCCAACGCCAGTCTCCCTCCCACCTTGGAAGAAGAAACTAAGACTGCCTACTGCTTCCAGACCAGAAGACACCTCGAGC
TGTCTGGGATTGCCAAAAATGAAAGAAAAAGAACAGCAGGAAGCAATTTGATGAAGTACAAAATAGACTTAATGAACAAG
CCTGTGAGGAGATTTTGAAAGTAGAACAGAAATACAACCATTTTTTCAGAAGAGGTTAGAATTGATCACCAAAATCCCAC
ATTTTGGGGTAACAACATTTGTCAACCATCCACAAATGTCCACGCTGTTTGGGGAGGAGGATGAAGAGGCAGTTGCATTA
TTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTGACAGAATAGATTTTTATTTTTATGAAAACCCTT
ACTTTGAAAATAAAGTTCTCTCCAAAAAATTTTATTTGAATGAGAGTGGTGGTCCTTCTTCAAAGTCCACTGAAATCAAA
TGGAAATCTGGAAAGGATTTGACAAAACATTCCAGTCCAATGCAGAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACC
AGAG

ORF - retro_ogar_465 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.49 %
Parental protein coverage: 68.49 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalPKRQSP-LPPQKKKPRLPTAPRPEDTSASQGLP-KKKEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVE
P.RQSP.LPP.KKK.RLPTA.RPEDTS...GLP.K.K.K.........DEVQN...RLNEQA.EEILKVE
RetrocopyPQRQSP<LPPWKKKLRLPTASRPEDTSSCLGLP>K*KKKNSRK---QFDEVQN---RLNEQACEEILKVE
ParentalQKYNKLRQPFFQK-RSELIAKIPNFWVTTFVNHPQGLVSALLGEEDEEA-LHYLTRVEVTEFEDIKSGYR
QKYN.....FF...R.ELI.KIP.F.VTTFVNHPQ...S.L.GEEDEEA.LHYLTRVEVTEFEDIKSG.R
RetrocopyQKYNH----FFRR<RLELITKIPHFGVTTFVNHPQ--MSTLFGEEDEEA>LHYLTRVEVTEFEDIKSGDR
ParentalIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPE
IDFYF.ENPYFENKVLSK.F.LNESG.PSSKSTEIKWKSGKDLTK.SS..QNKASRKRQHEEPE
RetrocopyIDFYFYENPYFENKVLSKKFYLNESGGPSSKSTEIKWKSGKDLTKHSSPMQNKASRKRQHEEPE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide