RetrogeneDB ID: retro_mputfur_799

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896949.1:6964048..6964589(+)
• Located in intron of: ENSMPUG00000011318

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000013069
• Aliases: None
• Description: None

Sequence

>retro_mputfur_799
ATGACCCCCAAACACCAGTCTTTGATCCTGCCTCAAACAAAGAAACTGAGATTTCCTCCTGCTCCCAAGCCAGAGGAGAC
ATCACCCCTCTCCACTTGCCAAAGGGAGACACAGAACAGCAAGAAGCTTCAAGAAGCACCTGAACATACTGAAGAAGTAC
AAGATGAAACAGATTTGCTGAACAAGCCAGTGAGGAAATTCTGAGTAGAACAGAAATATAAGAAACTCCAAGCATTTTTT
CAAAGGCACTGAAATTGATTGCCAAAATGCCAAATTTGGGGTAACAACATCTGTCAATGATCCACAAGTGTCTGTACTGC
TTGGGGAGGAAGAGGCATTGCATTATTTGACAAGAGTTGAAGTGACATAATTCAAAGATATAAAATCAGGTTACAGAATA
GATTTTTATTTTGATGAAAACCCTTACTTTGAAAATAAAATTCTCTCCAAAGACTTTCATCTACACGAGCATGGTGATCC
ATCTTCAAATTCCACTGAAATCCGGAAAGGATCTGATGAAATGTCCAAGTCAAACACAGAA

Alignment

ORF - retro_mputfur_799 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.9 %
• Parental protein coverage: 63.79 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAPKRQSSLPPQMKKPRQPPAPKPGQTSTSQHLHRGAE--KEQQEAIEHIDEVQNEIDRLNEQASEEILK
          M.PK.QS...PQ.KK.R.PPAPKP..TS......R.....K..QEA.EH..EVQ.E.D.LN.........
Retrocopy MTPKHQSLILPQTKKLRFPPAPKPEETSPLSTCQRETQNSKKLQEAPEHTEEVQDETDLLNKPVRK--F*

Parental  VEQKYNKLRQPFFQ-KRSELIAKIPN-FWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYR
          VEQKY.KL.Q.FFQ.K...LIAK.PN.F.VTT.VN.PQVS.LLGEE..EALHYLTRVEVT.F.DIKSGYR
Retrocopy VEQKYKKL-QAFFQ<KALKLIAKMPN<FGVTTSVNDPQVSVLLGEE--EALHYLTRVEVT*FKDIKSGYR

Parental  IDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQ
          IDFYFDENPYFENK.LSK.FHL.E.GDPSS.STEI..K......K....
Retrocopy IDFYFDENPYFENKILSKDFHLHEHGDPSSNSTEIR-KGSDEMSKSNTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_799 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_799 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 22 parental genes, and 194 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015686	7 retrocopies	retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus	ENSBTAG00000020959	8 retrocopies	retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Canis familiaris	ENSCAFG00000032728	2 retrocopies	retro_cfam_47, retro_cfam_83,