Parental gene:

ENSECAG00000008548

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:25:35565622..35567828(+)


>ENSECAG00000008548
TTCGAGAAGAGGCCCAGAAACTTCGGGCTTCGACAGGACATCCAGCCCAAACGGGACCTCACCCGCTTCGTCAAATGGCC
CCGCTACATCCGGCTGCAGCGACAGAGGGCGATCCTCTATAAGCGGCTCAAGGTGCCTCCCGCGATCAACCAGTTCACCC
AGGCCCTGGACCGCCAGACAGCTACTCAGCTGCTCAAGCTGGCCCACAAGTACAGGCCAGAGACAAAGCAAGAGAAGAAG
CAGAGGCTGCTGGCCCGGGCTGAGAAGAAGGCTGCTGGCAAAGGGGATGTCCCCACTAAGAGGCCACCGGTCCTTCGAGC
AGGGGTCAATACTGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTAGTGATCGCGCACGACGTGGATCCCATCG
AGCTGGTCGTCTTCCTCCCTGCCCTGTGTCGGAAGATGGGGGTGCCCTACTGCATCATCAAGGGCAAGGCGCGGCTGGGG
CGTCTGGTCCACAGGAAGACCTGCACCACCGTCGCCTTCACACAAGTCAACTCGGAAGACAAAGGAGCTCTGGCCAAGCT
GGTGGAAGCTATCAGGACCAACTACAACGACAGATACGACGAGATCCGCCGTCACTGGGGAGGCAACGTCCTGGGTCCAA
AATCGGTGGCTCGCATCGCCAAGCTAGAGAAGGCAAAGGCTAAAGAACTGGCCACCAAGCTGGGCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 942 .79 RPM
SRP021940_embryo 883 .51 RPM
SRP021940_cerebellum 484 .89 RPM
SRP021940_testis 419 .47 RPM
SRP021940_placental_villous 564 .68 RPM
SRP021940_articular_cartilage 1464 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011559 possible_ortholog 5 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
Homo sapiens ENSG00000148303 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 ortholog_one2one 13 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000019730 possible_ortholog 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 possible_ortholog 11 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 possible_ortholog 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_4 91.91 100.00
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2. retro_ecab_402 63.19 75.32
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Download FASTA sequences of all ENSECAG00000008548 retrocopies