RetrogeneDB ID:

retro_nleu_82

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397284.1:18777680..18778481(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000018439
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7A
Ensembl ID:ENSNLEG00000013068
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_82
ATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGT
GGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACTCGCT
TTGTGAAATGGCCCCACTATATCAGGTTGCAGCGTCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGTGATT
AACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCATAAGTACAGACCAGAGACAAA
GCAAGAGAAGAAGCAGAGACTGTTGGCCCGGGCCCAGAAGAAAGCTGCTGGCAAAGGAGATGTCCCCACGAAGAGACCAC
CTGTCCTTCGAGCAGGAGTTAACACCGTCACCATGCTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC
GTGGATCCCATTGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAA
GGCAAGACTGGGACGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACAAAGGTGAACTCAGAAGACAAAGGAG
CTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAATGACAGATACGATGAGATCTGCCGTCACTGGGGCAGCAAC
GTCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTA
A

ORF - retro_nleu_82 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.37 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAIL
MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWP.YIRLQRQRAIL
RetrocopyMPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPHYIRLQRQRAIL
ParentalYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV
YKRLKVPP.INQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARA.KKAAGKGDVPTKRPPVLRAGV
RetrocopyYKRLKVPPVINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAQKKAAGKGDVPTKRPPVLRAGV
ParentalNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSE
NTVT.LVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFT.VNSE
RetrocopyNTVTMLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTKVNSE
ParentalDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
DKGALAKLVEAIRTNYNDRYDEI.RHWG.NVLGPKSVARIAKLEKAKAKELATKLG
RetrocopyDKGALAKLVEAIRTNYNDRYDEICRHWGSNVLGPKSVARIAKLEKAKAKELATKLG