RetrogeneDB ID:

retro_nleu_267

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397262.1:1163450..1164250(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7A
Ensembl ID:ENSNLEG00000013068
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_267
ATGCCGAAAGGAAAGAAGGCCAAGGGGATGAAGGTGGCTCCAGCCCCTGCTGTCATGAAGAAGCAGGAGGCCAAGAAAGT
GGAGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCGTTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCACT
TTGTGAAATGGCCCCGCTATGTCAGGTTGCAGCAGCAGAGAGCCTTCCTCTATAAACGGCTGAAAGTGCCTCCTGCGATT
AACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTGAGCTGGCCCACAAATACAGACCAGACACAAA
GCAAGAGAAGAAGCAGAGGCTCTTGGCCCAGGCCAAGGAGAAAGCTGCTGGCAAAGGGGACAACTCCACTAAGAGACTAC
CTGTCCTTCAAGCAGGAGTTAACACCCAGTCACCACCTTGGTGGAGAATAAGAAAGCTCAGCTGGTGGTGACCGCACACG
ATGTGGATTCCATCAAGCTGGTTGTCTTTTTGCCTGCCCTGTGTCATAAAATGGGGGTCCCTTACTGCATTATCAAGGGG
AAGGCAAGACTGGGGCGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACAGGTTAACTGGGAAGACAAAAG
TGCTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGAGAGAGACGATGAGATCCACCATCACTGGGGAAGCA
ATGTCCTGGGCCCCAAGTCTGTGGCTCACATCGCCAAGCTCAAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGT

ORF - retro_nleu_267 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.96 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAIL
MPKGKKAKG.KVAPAPAV.KKQEAKKV.NPLFEKRPKNFG.GQDIQPKRDLT.FVKWPRY.RLQ.QRA.L
RetrocopyMPKGKKAKGMKVAPAPAVMKKQEAKKVENPLFEKRPKNFGVGQDIQPKRDLTHFVKWPRYVRLQQQRAFL
ParentalYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV
YKRLKVPPAINQFTQALDRQTATQLL.LAHKYRP.TKQEKKQRLLA.A..KAAGKGD..TKR.PVL.AGV
RetrocopyYKRLKVPPAINQFTQALDRQTATQLLELAHKYRPDTKQEKKQRLLAQAKEKAAGKGDNSTKRLPVLQAGV
ParentalNTVT-TLVENKKAQLVVI-AHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
NT...T.....K....V..AHDVD.I.LVVFLPALC.KMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
RetrocopyNTQS<TTLVENKKAQLVVTAHDVDSIKLVVFLPALCHKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVN
ParentalSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
.EDK.ALAKLVEAIRTNYN.R.DEI..HWG.NVLGPKSVA.IAKL.KAKAKELATKLG
RetrocopyWEDKSALAKLVEAIRTNYNERDDEIHHHWGSNVLGPKSVAHIAKLKKAKAKELATKLG