Parental gene: | SNRPD1, ENSDNOG00000018773 |
| Aliases: | None |
| Description: | small nuclear ribonucleoprotein D1 polypeptide 16kDa [Source:HGNC Symbol;Acc:11158] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_5395:21956..31437(+) |
>ENSDNOG00000018773
TTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAATGGAACACAGGTCCATGGAACCATCACAGGTGT
GGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACACTGA
GTATTAGAGGAAATAATATTCGTTATTTTATTCTGCCAGACAGCTTACCTCTGGATACGCTACTTGTGGATGTTGAACCT
AAGGTGAAATCCAAGAAAAGGGAAGCNNTTGCAGGAAGAGGAAGAGGCCGAGGTAGAGGAAGAGGACGTGGCCGTGGTAG
AGGAAGAGGAGGGCCTAGGCGATAA
TTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAATGGAACACAGGTCCATGGAACCATCACAGGTGT
GGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACACTGA
GTATTAGAGGAAATAATATTCGTTATTTTATTCTGCCAGACAGCTTACCTCTGGATACGCTACTTGTGGATGTTGAACCT
AAGGTGAAATCCAAGAAAAGGGAAGCNNTTGCAGGAAGAGGAAGAGGCCGAGGTAGAGGAAGAGGACGTGGCCGTGGTAG
AGGAAGAGGAGGGCCTAGGCGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 39 .48 RPM |
| SRP012922_cerebellum | 21 .31 RPM |
| SRP012922_heart | 9 .28 RPM |
| SRP012922_kidney | 20 .26 RPM |
| SRP012922_liver | 8 .51 RPM |
| SRP012922_lung | 26 .57 RPM |
| SRP012922_quadricep_muscle | 8 .13 RPM |
| SRP012922_spleen | 32 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000006364 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000008292 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000018247 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000012352 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003992 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000005567 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000023761 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025874 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000009909 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005511 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000013714 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002654 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_1254 | 67.29 | 93.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1716 | 70.75 | 92.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1832 | 52.04 | 83.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_2403 | 65.49 | 96.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000018773 retrocopies