Parental gene:

SNRPD1, ENSBTAG00000008292

Aliases:None
Description:Small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZC10]
Organism:Cow (Bos taurus)
Coordinates:24:34993831..35001567(-)


>ENSBTAG00000008292
ATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCACGAAACTGTAACCATTGAATTAAAGAATGGAACACAAGTCCACGG
AACAATCACAGGTGTAGATGTCAGTATGAACACACATCTTAAAGCAGTGAAAATGACCCTGAAGAACAGAGAACCTGTAC
AGCTGGAAACACTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTGCCAGACAGCTTACCTCTGGATACGCTACTC
GTGGATGTGGAACCAAAGGTGAAGTCTAAGAAAAGGGAAGCTGTTGCAGGAAGAGGCCGAGGCCGAGGAAGAGGACGTGG
CCGAGGCCGAGGCAGAGGCAGAGGGGGTCCTAGGCGATAA

Library Parental gene expression (RPM)
SRP017611_brain 11 .01 RPM
SRP017611_kidney 14 .46 RPM
SRP017611_liver 7 .40 RPM
ERP005899_muscle 28 .14 RPM
ERP005899_liver 11 .46 RPM
SRP030211_testis 43 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006364 ortholog_one2many 1 retrogene
retro_acar_129,
Ailuropoda melanoleuca ENSAMEG00000002576 possible_ortholog 1 retrogene
retro_amel_1905,
Canis familiaris ENSCAFG00000018247 possible_ortholog 1 retrogene
retro_cfam_373,
Dasypus novemcinctus ENSDNOG00000018773 possible_ortholog 4 retrogenes
retro_dnov_1254, retro_dnov_1716, retro_dnov_1832, retro_dnov_2403,
Felis catus ENSFCAG00000012352 possible_ortholog 1 retrogene
retro_fcat_1885,
Homo sapiens ENSG00000167088 ortholog_one2many 2 retrogenes
retro_hsap_1147, retro_hsap_372,
Macaca mulatta ENSMMUG00000003992 possible_ortholog 2 retrogenes
retro_mmul_887, retro_mmul_891,
Mustela putorius furo ENSMPUG00000005567 possible_ortholog 1 retrogene
retro_mputfur_185,
Mus musculus ENSMUSG00000002477 ortholog_one2many 1 retrogene
retro_mmus_1996,
Nomascus leucogenys ENSNLEG00000006822 possible_ortholog 2 retrogenes
retro_nleu_2824, retro_nleu_945,
Oryctolagus cuniculus ENSOCUG00000023761 possible_ortholog 1 retrogene
retro_ocun_224,
Otolemur garnettii ENSOGAG00000007833 possible_ortholog 1 retrogene
retro_ogar_3085,
Pongo abelii ENSPPYG00000025874 possible_ortholog 3 retrogenes
retro_pabe_254, retro_pabe_948, retro_pabe_952,
Pan troglodytes ENSPTRG00000009909 possible_ortholog 2 retrogenes
retro_ptro_291, retro_ptro_781,
Pteropus vampyrus ENSPVAG00000005511 possible_ortholog 1 retrogene
retro_pvam_450,
Rattus norvegicus ENSRNOG00000013714 possible_ortholog 2 retrogenes
retro_rnor_2671, retro_rnor_2729,
Sarcophilus harrisii ENSSHAG00000011791 ortholog_one2many 1 retrogene
retro_shar_147,
Tursiops truncatus ENSTTRG00000002654 possible_ortholog 2 retrogenes
retro_ttru_1566, retro_ttru_1890,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_84 96.64 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_btau_144 96.52 96.64
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_btau_706 75.63 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSBTAG00000008292 retrocopies