Parental gene:

RPL18, ENSCPOG00000026334

Aliases:None
Description:60S ribosomal protein L18 [Source:UniProtKB/TrEMBL;Acc:H0W177]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_70:8594200..8596414(+)


>ENSCPOG00000026334
CAGGGAGTCGACATCCGCCACAACAAGGACCGAAAGGTCCGGCGCAAGGAGCCCAAGAGCCAGGACATCTACCTGAGGCT
GTTGGTCAAGCTGTACAGGTTTCTGGCCCGACGGACAAACTCCACCTTCAACCAGGTGGTGCTGAAGAGGTTGTTCATGA
GTCGCACCAACCGGCCACCTCTTTCCCTCTCCCGGATGATCCGGAAGATGAAGCTTCCTGGCCGGGAAAACAAGACAGCA
GTGGTTGTGGGGACAGTCACAGATGATGTGCGGGTTCTGGAGGTGCCCAAGCTGAAGGTTTGTGCCCTGCGTGTGACCAG
CCGCGCCCGAAGCCGCATCCTTAAGGCTGGGGGGAAGATCCTCACCTTTGACCAGCTGGCCCTGGAGTCCCCCAAGGGCC
GAGGCACAGTCCTGCTCTCTGGTCCACGCAAGGGCCGAGAGGTGTACCGGCATTTCGGCAAGGCCCCTGGAACCCCACAC
AGCCACACCAAACCCTATGTCCGCTCCAAGGGCCGGAAGTTCGAGCGCGCCAGAGGCAGACGGGCCAGCAGAGGCTACAA
GAACTAG

Library Parental gene expression (RPM)
SRP017611_liver 85 .88 RPM
SRP017611_kidney 155 .88 RPM
SRP017611_brain 83 .57 RPM
SRP040447_lung 269 .03 RPM
SRP040447_skeletal_muscle 210 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014872 possible_ortholog 3 retrogenes
retro_amel_1718, retro_amel_640, retro_amel_740,
Felis catus ENSFCAG00000008652 possible_ortholog 4 retrogenes
retro_fcat_1055, retro_fcat_1268, retro_fcat_1596, retro_fcat_718,
Gorilla gorilla ENSGGOG00000024878 possible_ortholog 7 retrogenes
retro_ggor_1038, retro_ggor_1280, retro_ggor_2200, retro_ggor_2550, retro_ggor_2624, retro_ggor_847, retro_ggor_937,
Macropus eugenii ENSMEUG00000000640 ortholog_one2one 1 retrogene
retro_meug_1568,
Macaca mulatta ENSMMUG00000022158 possible_ortholog 3 retrogenes
retro_mmul_32, retro_mmul_55, retro_mmul_92,
Monodelphis domestica ENSMODG00000014099 ortholog_one2many 1 retrogene
retro_mdom_906,
Mustela putorius furo ENSMPUG00000003891 possible_ortholog 4 retrogenes
retro_mputfur_135, retro_mputfur_1410, retro_mputfur_529, retro_mputfur_974,
Mus musculus ENSMUSG00000059070 ortholog_one2one 11 retrogenes
retro_mmus_1655, retro_mmus_2025, retro_mmus_2091, retro_mmus_2303, retro_mmus_2462, retro_mmus_2622, retro_mmus_2790, retro_mmus_3424, retro_mmus_3621, retro_mmus_726, retro_mmus_740,
Nomascus leucogenys ENSNLEG00000004537 possible_ortholog 11 retrogenes
retro_nleu_1124, retro_nleu_1136, retro_nleu_1410, retro_nleu_1799, retro_nleu_2006, retro_nleu_2380, retro_nleu_2464, retro_nleu_2597, retro_nleu_547, retro_nleu_577, retro_nleu_976,
Otolemur garnettii ENSOGAG00000003562 ortholog_one2one 16 retrogenes
retro_ogar_1167, retro_ogar_1474, retro_ogar_1563, retro_ogar_1753, retro_ogar_1978, retro_ogar_2394, retro_ogar_2419, retro_ogar_2527, retro_ogar_2613, retro_ogar_2833, retro_ogar_3319, retro_ogar_3456, retro_ogar_3458, retro_ogar_3459, retro_ogar_492, retro_ogar_996,
Oreochromis niloticus ENSONIG00000006539 ortholog_one2one 1 retrogene
retro_onil_43,
Pongo abelii ENSPPYG00000010206 possible_ortholog 6 retrogenes
retro_pabe_1003, retro_pabe_1337, retro_pabe_1402, retro_pabe_2681, retro_pabe_3100, retro_pabe_3176,
Rattus norvegicus ENSRNOG00000021035 ortholog_one2many 14 retrogenes
retro_rnor_1068, retro_rnor_1072, retro_rnor_1154, retro_rnor_1186, retro_rnor_1337, retro_rnor_1359, retro_rnor_2174, retro_rnor_2224, retro_rnor_2847, retro_rnor_2890, retro_rnor_516, retro_rnor_685, retro_rnor_856, retro_rnor_857,
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2one 2 retrogenes
retro_shar_571, retro_shar_659,
Sus scrofa ENSSSCG00000025928 possible_ortholog 5 retrogenes
retro_sscr_1028, retro_sscr_118, retro_sscr_836, retro_sscr_864, retro_sscr_925,
Ictidomys tridecemlineatus ENSSTOG00000012258 ortholog_one2one 5 retrogenes
retro_itri_261, retro_itri_323, retro_itri_828, retro_itri_853, retro_itri_957,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_703 57.41 52.66
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2. retro_cpor_733 95.24 99.47
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3. retro_cpor_1062 61.34 63.30
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4. retro_cpor_1322 69.84 99.47
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Download FASTA sequences of all ENSCPOG00000026334 retrocopies