RetrogeneDB ID:

retro_ogar_3319

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873777.1:373120..373679(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000003562
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_3319
ATGGGAGTCAATATTCACCATATCAAGGACCAAAAGTTTTGTCACAAGGAGCCCAAGAGCCAGGACATTTACCTGAGGCT
GTTGGTCTAGCTGTACAGGTTGCTGGCCAGACGAACCAACTCTACCTTCAACCAGGGTGTGCCGAAGAGGTTGTTTATGA
GTCGTACCAATGGGCTACCACTGTCTCTTTCCTGAATGATCCAAAAGATAAAACTTCCTGGCCGGGAAAACAAAACAGCT
GTGGTCGTGGGGACCATACCAGATGATGTGCAGGTTCAGGAAGTTCCTGTTTGAAGGTGTGTGCCTTGCACTGAGCAGCT
GGGCCTGCACCCATATCCTCAAGGCTGGGGGCAAGATCCTCACCTTTGACCTACTGGCCCTGGGCTCCCCCAAGGACCCT
GGCACCTTCCTGCTCTCCGGTCCCCAAAAGGACTGGGAGTTGTACTGGCATTTGGCAAGGGCCCAGCACCCACAGAGCCA
CACCAAATCCTATGTCTGCTCCAAGAGTCAGAAGTTCCAGTGTGCCAGAGACCCATGGGCTAGCCGAGGCTACAAAAAC

ORF - retro_ogar_3319 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.63 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM
MGV.I.H.KD.K...KEPKSQDIYLRLLV.LYR.LARRTNSTFNQ.V.KRLFMSRTN..PLSLS.MI.K.
RetrocopyMGVNIHHIKDQKFCHKEPKSQDIYLRLLV*LYRLLARRTNSTFNQGVPKRLFMSRTNGLPLSLS*MIQKI
ParentalKLPGRENKTAVVVGTITDDVRVQEVPK-LKVCALR-VSSRARTRILKAGGKILTFDQLALDSPKGRGTVL
KLPGRENKTAVVVGTI.DDV.VQEVP..LKVCAL...SS.A.T.ILKAGGKILTFD.LAL.SPK..GT.L
RetrocopyKLPGRENKTAVVVGTIPDDVQVQEVPV<LKVCALH<LSSWACTHILKAGGKILTFDLLALGSPKDPGTFL
ParentalLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN
LSGP.K..E.Y.H...A...P.SHTK.YV.SK..KF..AR...ASRGYKN
RetrocopyLSGPQKDWELYWHLARAQ-HPQSHTKSYVCSKSQKFQCARDPWASRGYKN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide