Parental gene:

C9ORF85, ENSCPOG00000025848

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_21:22985840..23033873(+)


>ENSCPOG00000025848
ATGAGCTCCCAGAAAGGCAATGTGGCTCGTTCCAGGCCTCAGAAGCACCAGAATACATTTAGCTTCAAAAATGACAAGTT
TGATAAGACTGTTCAGACGAAGAAAATCAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGTAAAGAAGTTCTTGAAT
GGCGGGTAAAATACAGCAAATATAAACCATTATCAAAGCCTAAAAAATGCGTTAAATGTTTACAGAAGACTGTGAAGGAT
TCTTACCACATTATGTGTAGACCATGTGCTTATGAACTTGAAGTTTGTGCAAAATGTGGAAAGAAAGAAGACATTGTTAT
TCCGTTTAATAAAGAACCAGAAAAGACAGAAAATAGTGAAAATAATCAAAGAGCCAATCATAGAAGAAGCTGCAAAAGGA
ATGAAGAAAGTGATGATGACTTAGATTTTGATATTGATTTAGGTGACACAGATGATAACCAA

Library Parental gene expression (RPM)
SRP017611_liver 8 .62 RPM
SRP017611_kidney 4 .82 RPM
SRP017611_brain 4 .20 RPM
SRP040447_lung 2 .67 RPM
SRP040447_skeletal_muscle 2 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007254 ortholog_one2one 1 retrogene
retro_amel_730,
Bos taurus ENSBTAG00000006831 possible_ortholog 1 retrogene
retro_btau_39,
Canis familiaris ENSCAFG00000001820 ortholog_one2one 1 retrogene
retro_cfam_2126,
Callithrix jacchus ENSCJAG00000001441 ortholog_one2one 2 retrogenes
retro_cjac_1283, retro_cjac_1374,
Felis catus ENSFCAG00000031942 ortholog_one2one 1 retrogene
retro_fcat_1955,
Homo sapiens ENSG00000155621 ortholog_one2one 2 retrogenes
retro_hsap_2104, retro_hsap_2895,
Myotis lucifugus ENSMLUG00000024309 ortholog_one2one 2 retrogenes
retro_mluc_2449, retro_mluc_2526,
Macaca mulatta ENSMMUG00000018881 ortholog_one2one 2 retrogenes
retro_mmul_670, retro_mmul_988,
Mustela putorius furo ENSMPUG00000008971 ortholog_one2one 1 retrogene
retro_mputfur_1413,
Mus musculus ENSMUSG00000035171 ortholog_one2one 6 retrogenes
retro_mmus_1049, retro_mmus_2254, retro_mmus_2286, retro_mmus_2781, retro_mmus_2941, retro_mmus_3698,
Nomascus leucogenys ENSNLEG00000001023 ortholog_one2one 1 retrogene
retro_nleu_1272,
Oryctolagus cuniculus ENSOCUG00000024578 ortholog_one2one 2 retrogenes
retro_ocun_703, retro_ocun_766,
Otolemur garnettii ENSOGAG00000011302 ortholog_one2one 1 retrogene
retro_ogar_979,
Pongo abelii ENSPPYG00000029745 possible_ortholog 2 retrogenes
retro_pabe_1996, retro_pabe_2397,
Pan troglodytes ENSPTRG00000021018 ortholog_one2one 2 retrogenes
retro_ptro_1543, retro_ptro_1958,
Rattus norvegicus ENSRNOG00000027161 ortholog_one2one 5 retrogenes
retro_rnor_1898, retro_rnor_2010, retro_rnor_2242, retro_rnor_2859, retro_rnor_2960,
Sorex araneus ENSSARG00000004523 ortholog_one2one 1 retrogene
retro_sara_260,
Tupaia belangeri ENSTBEG00000015556 ortholog_one2one 6 retrogenes
retro_tbel_1998, retro_tbel_200, retro_tbel_2406, retro_tbel_2410, retro_tbel_3539, retro_tbel_940,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_316 65.45 70.78
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2. retro_cpor_1538 64.22 68.83
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Download FASTA sequences of all ENSCPOG00000025848 retrocopies