Parental gene:

RPLP0, ENSCPOG00000021812

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:5345801..5349647(-)


>ENSCPOG00000021812
ATGCCCAGGGAAGACAGGGCGACCTGGAAATCCAACTATTTCCTTAAGATCATCCAACTTTTGGATGATTATCCAAAATG
CTTCATTGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGTATGTCCCTCCGAGGAAAGGCTGTAGTGC
TGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGACATCTGGAGAATAACCCAGCTCTGGAGAAACTGTTGCCT
CATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGACCTCACTGAGATCAGAGATATGCTGCTGGCCAATAAGGT
GCCAGCTGCTGCCCGTGCTGGTGCCATTGCACCATGTGAAGTCACTGTGCCAGCTCAGAATACTGGTCTGGGGCCTGAGA
AGACCTCCTTCTTCCAGGCTCTGGGCATCACCACTAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTACAGCTG
ATTAAAACTGGAGACAAAGTGGGAGCCAGCGAGGCCACCCTCCTGAACATGTTGAACATCTCTCCATTCTCTTTTGGGCT
GATCATTCAGCAAGTGTTTGATAATGGCAGCATCTACAACCCTGAAGTGCTTGACATTACAGAGGAAACTCTGCATTCTC
GTTTTCTGGAAGGTGTCCGCAATGTGGCCAGTGTTTGTCTGCAGATCGGTTACCCAACTGTTGCATCAGTGCCTCATTCT
ATCATCAATGGGTACAAAAGGGTTTTGGCTTTGTCTGTGGAGACTGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGC
CTTCTTGGCTGATCCATCTGCATTTGCCCCAGCCAAGGTTGAAACCAAGGAAGAGTCGGAGGAATCAGATGAAGATATGG
GATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
SRP017611_liver 282 .27 RPM
SRP017611_kidney 358 .97 RPM
SRP017611_brain 149 .89 RPM
SRP040447_lung 571 .00 RPM
SRP040447_skeletal_muscle 890 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003756 possible_ortholog 2 retrogenes
retro_acar_111, retro_acar_115,
Choloepus hoffmanni ENSCHOG00000002745 ortholog_one2many 2 retrogenes
retro_chof_1115, retro_chof_2341,
Callithrix jacchus ENSCJAG00000008677 possible_ortholog 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Erinaceus europaeus ENSEEUG00000007553 ortholog_one2one 1 retrogene
retro_eeur_612,
Homo sapiens ENSG00000089157 possible_ortholog 7 retrogenes
retro_hsap_1403, retro_hsap_1553, retro_hsap_1889, retro_hsap_2095, retro_hsap_2334, retro_hsap_512, retro_hsap_784,
Gorilla gorilla ENSGGOG00000026582 possible_ortholog 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Macropus eugenii ENSMEUG00000016409 possible_ortholog 12 retrogenes
retro_meug_1211, retro_meug_1245, retro_meug_1339, retro_meug_1410, retro_meug_1672, retro_meug_1689, retro_meug_1789, retro_meug_1800, retro_meug_1943, retro_meug_2166, retro_meug_294, retro_meug_772,
Macaca mulatta ENSMMUG00000009157 possible_ortholog 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mus musculus ENSMUSG00000067274 ortholog_one2many 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Oryctolagus cuniculus ENSOCUG00000005749 possible_ortholog 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 possible_ortholog 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Procavia capensis ENSPCAG00000016429 possible_ortholog 6 retrogenes
retro_pcap_232, retro_pcap_314, retro_pcap_339, retro_pcap_353, retro_pcap_408, retro_pcap_67,
Petromyzon marinus ENSPMAG00000001339 ortholog_many2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 possible_ortholog 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Rattus norvegicus ENSRNOG00000001148 ortholog_one2many 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 possible_ortholog 2 retrogenes
retro_shar_286, retro_shar_413,
Tupaia belangeri ENSTBEG00000005498 ortholog_one2one 1 retrogene
retro_tbel_3323,
Tursiops truncatus ENSTTRG00000005658 possible_ortholog 1 retrogene
retro_ttru_965,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_298 66.67 76.25
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2. retro_cpor_449 75.00 67.22
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3. retro_cpor_475 64.89 91.97
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4. retro_cpor_498 85.54 81.94
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5. retro_cpor_601 74.29 58.53
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Download FASTA sequences of all ENSCPOG00000021812 retrocopies