Parental gene:

RPLP0, ENSACAG00000003756

Aliases:None
Description:None
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL343338.1:451987..456025(+)


>ENSACAG00000003756
ATGCCCAGGGAAGACCGAGCCACGTGGAAATCCAACTATTTCCTCAAGATCATCCAACTCTTGGATGATTATCCAAAATG
CTTCATTGTGGGAGCAGACAACGTGGGGTCCAAGCAGATGCAGCAGATCCGCATGTCCCTGCGCGGGAAGGCCGTGGTCC
TCATGGGGAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCCTGCTCTGGAGAAGCTTTTGCCT
CATATCCGTGGCAACGTGGGCTTTGTGTTCACCAAGGAGGATCTGACTGAAATTCGAGACATGCTGTTGGCCAACAAAGT
GCCAGCTGCCGCTCGTGCCGGCGCCATTGCCCCCTGCGATGTGACCGTGCCAGCCCAAAACACCGGCCTGGGCCCTGAGA
AGACCTCCTTTTTCCAGGCTTTGGGCATTACCACAAAGATCTCCAGAGGCACCATTGAAATCCTGAGCGATGTGCAGTTG
ATCAAGACCGGAGACAAAGTGGGTGCCAGCGAGGCCACCTTGCTGAACATGCTGAACATCTCCCCCTTCTCCTTTGGGCT
CATCATCCAGCAGGTGTTCGATAACGGCAGCATTTATAACCCTGAAGTTCTGGACATCACCGAGGAGACCCTGCGAGGAC
GTTTCCTGGAGGGTGTCCGCAACGTTGCCAGCGTCTGCTTGCAAATCGGCTATCCAACCGTTGCCTCTGTGCCCCACTCC
ATCATCAATGGGTACAAACGGGTCCTGGCTGTGGCTGTGGAAACAGACTACTCTTTCCCATTGGCTGAAAAGGTGAAGGC
CTTCCTGGCTGACCCATCCGCTTTTGTGGCTGCTGCCCCGGTCGCAGTGGAGACAGTGGCCCCGGTTGCGGCTGCCCCGG
CCAAAGTGGAAGCCAAGGAAGAGTCGGAAGAGTCGGACGAAGATATGGGATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
SRP009831_adrenal 895 .88 RPM
SRP009831_brain 237 .88 RPM
SRP009831_dewlap 417 .90 RPM
SRP009831_embryo 1500 .50 RPM
SRP009831_heart 914 .17 RPM
SRP009831_liver 889 .79 RPM
SRP009831_lung 635 .91 RPM
SRP009831_ovary 248 .21 RPM
SRP009831_skeletal_muscle 380 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005144 possible_ortholog 4 retrogenes
retro_amel_1179, retro_amel_1194, retro_amel_1377, retro_amel_847,
Canis familiaris ENSCAFG00000010227 possible_ortholog 5 retrogenes
retro_cfam_1580, retro_cfam_224, retro_cfam_487, retro_cfam_534, retro_cfam_693,
Callithrix jacchus ENSCJAG00000008677 possible_ortholog 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Cavia porcellus ENSCPOG00000021812 possible_ortholog 5 retrogenes
retro_cpor_298, retro_cpor_449, retro_cpor_475, retro_cpor_498, retro_cpor_601,
Equus caballus ENSECAG00000015816 possible_ortholog 2 retrogenes
retro_ecab_1090, retro_ecab_585,
Felis catus ENSFCAG00000013354 possible_ortholog 1 retrogene
retro_fcat_441,
Gorilla gorilla ENSGGOG00000026582 possible_ortholog 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Macropus eugenii ENSMEUG00000016409 ortholog_one2one 12 retrogenes
retro_meug_1211, retro_meug_1245, retro_meug_1339, retro_meug_1410, retro_meug_1672, retro_meug_1689, retro_meug_1789, retro_meug_1800, retro_meug_1943, retro_meug_2166, retro_meug_294, retro_meug_772,
Myotis lucifugus ENSMLUG00000001970 possible_ortholog 11 retrogenes
retro_mluc_1016, retro_mluc_1460, retro_mluc_1503, retro_mluc_1806, retro_mluc_1966, retro_mluc_2293, retro_mluc_268, retro_mluc_497, retro_mluc_564, retro_mluc_565, retro_mluc_882,
Macaca mulatta ENSMMUG00000009157 possible_ortholog 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mus musculus ENSMUSG00000067274 possible_ortholog 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Oryctolagus cuniculus ENSOCUG00000005749 possible_ortholog 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 possible_ortholog 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Petromyzon marinus ENSPMAG00000001339 ortholog_one2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 possible_ortholog 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Rattus norvegicus ENSRNOG00000001148 possible_ortholog 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 ortholog_one2one 2 retrogenes
retro_shar_286, retro_shar_413,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_111 70.30 63.81
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2. retro_acar_115 87.97 100.00
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Download FASTA sequences of all ENSACAG00000003756 retrocopies