Parental gene:

RPLP0, ENSCAFG00000010227

Aliases:None
Description:Canis lupus familiaris ribosomal protein, large, P0 (RPLP0), mRNA. [Source:RefSeq mRNA;Acc:NM_001252137]
Organism:Dog (Canis familiaris)
Coordinates:26:16148466..16153614(-)


>ENSCAFG00000010227
ATGCCCAGGGAAGACAGGGCGACCTGGAAATCCAACTACTTCCTTAAGATCATCCAACTTTTGGATGATTATCCAAAATG
CTTCATTGTGGGAGCAGACAATGTGGGTTCAAAGCAGATGCAGCAGATCCGCATGTCCCTCCGCGGGAAGGCTGTCGTGC
TGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCATCTGGAGAACAACCCAGCCCTGGAGAAACTGTTGCCT
CATATCCGGGGGAATGTGGGCTTTGTATTCACCAAGGAGGACCTCACTGAGATCAGGGACATGCTGCTGGCCAATAAGGT
TCCTGCTGCTGCCCGTGCTGGTGCCATAGCTCCATGTGAAGTCACTGTGCCAGCCCAGAACACAGGTCTGGGGCCCGAGA
AGACCTCTTTCTTCCAGGCTTTAGGCATTACCACTAAGATCTCTAGGGGCACCATTGAAATCTTGAGTGATGTGCAGCTG
ATTAAGACGGGAGACAAAGTGGGAGCCAGCGAAGCCACACTGCTCAACATGCTGAACATCTCCCCCTTCTCCTTTGGGCT
GATCATCCAGCAGGTGTTTGATAATGGCAGCATCTACAACCCTGAAGTGCTTGACATCACAGAGGAAACTCTGCATTCTC
GCTTCTTGGAGGGTGTCCGCAACGTTGCCAGCGTATGTCTGCAGATAGGTTACCCGACTGTTGCATCAGTGCCCCATTCT
ATCATCAATGGATACAAGCGGGTCCTGGCTTTGTCTGTGGAAACTGATTACACCTTTCCACTTGCTGAAAAGGTCAAGGC
CTTCTTGGCTGATCCATCTGCATTTGTGGCTGCTGCTCCTGTGGCTGCTGCCACCACTGCTGCACCTGCTGCTGCCGCAG
CCCCAGCCAAGGTTGAAGCAAAGGAAGAGTCGGAGGAATCGGACGAGGATATGGGATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
SRP017611_brain 65 .42 RPM
SRP017611_kidney 860 .99 RPM
SRP017611_liver 131 .90 RPM
SRP012049_cerebellum 182 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003756 possible_ortholog 2 retrogenes
retro_acar_111, retro_acar_115,
Ailuropoda melanoleuca ENSAMEG00000005144 ortholog_one2one 4 retrogenes
retro_amel_1179, retro_amel_1194, retro_amel_1377, retro_amel_847,
Choloepus hoffmanni ENSCHOG00000002745 ortholog_one2many 2 retrogenes
retro_chof_1115, retro_chof_2341,
Callithrix jacchus ENSCJAG00000008677 possible_ortholog 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Felis catus ENSFCAG00000013354 ortholog_one2one 1 retrogene
retro_fcat_441,
Homo sapiens ENSG00000089157 possible_ortholog 7 retrogenes
retro_hsap_1403, retro_hsap_1553, retro_hsap_1889, retro_hsap_2095, retro_hsap_2334, retro_hsap_512, retro_hsap_784,
Gorilla gorilla ENSGGOG00000026582 possible_ortholog 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Macropus eugenii ENSMEUG00000016409 possible_ortholog 12 retrogenes
retro_meug_1211, retro_meug_1245, retro_meug_1339, retro_meug_1410, retro_meug_1672, retro_meug_1689, retro_meug_1789, retro_meug_1800, retro_meug_1943, retro_meug_2166, retro_meug_294, retro_meug_772,
Myotis lucifugus ENSMLUG00000001970 ortholog_one2one 11 retrogenes
retro_mluc_1016, retro_mluc_1460, retro_mluc_1503, retro_mluc_1806, retro_mluc_1966, retro_mluc_2293, retro_mluc_268, retro_mluc_497, retro_mluc_564, retro_mluc_565, retro_mluc_882,
Macaca mulatta ENSMMUG00000009157 possible_ortholog 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mustela putorius furo ENSMPUG00000003055 ortholog_one2one 4 retrogenes
retro_mputfur_1632, retro_mputfur_362, retro_mputfur_426, retro_mputfur_910,
Mus musculus ENSMUSG00000067274 possible_ortholog 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Nomascus leucogenys ENSNLEG00000000292 ortholog_one2one 11 retrogenes
retro_nleu_1080, retro_nleu_1365, retro_nleu_1419, retro_nleu_1470, retro_nleu_1551, retro_nleu_1639, retro_nleu_1686, retro_nleu_1722, retro_nleu_2058, retro_nleu_2927, retro_nleu_3095,
Oryctolagus cuniculus ENSOCUG00000005749 ortholog_one2one 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 possible_ortholog 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Procavia capensis ENSPCAG00000016429 possible_ortholog 6 retrogenes
retro_pcap_232, retro_pcap_314, retro_pcap_339, retro_pcap_353, retro_pcap_408, retro_pcap_67,
Petromyzon marinus ENSPMAG00000001339 ortholog_many2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 possible_ortholog 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Pteropus vampyrus ENSPVAG00000003110 ortholog_one2one 3 retrogenes
retro_pvam_114, retro_pvam_62, retro_pvam_745,
Rattus norvegicus ENSRNOG00000001148 possible_ortholog 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 possible_ortholog 2 retrogenes
retro_shar_286, retro_shar_413,
Ictidomys tridecemlineatus ENSSTOG00000011327 ortholog_one2one 4 retrogenes
retro_itri_1155, retro_itri_276, retro_itri_331, retro_itri_982,
Tarsius syrichta ENSTSYG00000009732 ortholog_one2one 7 retrogenes
retro_tsyr_1133, retro_tsyr_130, retro_tsyr_1376, retro_tsyr_1429, retro_tsyr_727, retro_tsyr_75, retro_tsyr_84,
Tursiops truncatus ENSTTRG00000005658 possible_ortholog 1 retrogene
retro_ttru_965,
Vicugna pacos ENSVPAG00000012156 ortholog_one2one 2 retrogenes
retro_vpac_234, retro_vpac_45,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_224 93.38 100.00
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2. retro_cfam_487 87.77 100.00
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3. retro_cfam_534 55.36 50.79
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4. retro_cfam_693 59.90 63.09
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5. retro_cfam_1580 95.27 100.00
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Download FASTA sequences of all ENSCAFG00000010227 retrocopies