Parental gene:

RPL13A, ENSCPOG00000012417

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_70:8010518..8014120(-)


>ENSCPOG00000012417
ATGGCGGAAGGGCAGGTCCTGGTGCTGGATGGCAGAGGCCATCTTCTGGGCCGCCTGGCAGCCATTGTGGCCAAGCAGGT
CCTGCTGGCAGGGCACAAGGTGGTGGTTGTGCGCTGTGAGGGCATCAATATATCTGGCAACTTCTACAGAAACAAGTTGA
AGTACTTGGCCTTTCTCCGCAAGCGGATGAACACCAACCCATCTCGTGGCCCCTACCACTTCCGGGCCCCTAGCCGCATC
TTCTGGCGAACTGTGCGAGGGATGCTGCCCCATAAGACCAAGCGAGGCCAAGCTGCCCTGGACCGCCTCAAGGTGTTCGA
TGGGATTCCACCACCCTATGACAAGAAAAAGCGAATGGTGGTTCCTGCCGCCCTCAAGGTTGTGCGCCTGAAGCCAACAA
GGAAGTTTGCCTACCTGGGTCGCCTGGCCCATGAGGTTGGCTGGAAGTACCAGGCGGTGACAGCTACCCTGGAGGAGAAG
AGGAAGGAGAAGGCCAAGATCCACTACCGGAAGAAGAAGCAAATCATGAGGCTACGGAAACAGGCTGAAAAGAATGTGGA
GAAGAAAATTGGCAAGTTCACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA

Library Parental gene expression (RPM)
SRP017611_liver 158 .83 RPM
SRP017611_kidney 217 .85 RPM
SRP017611_brain 128 .66 RPM
SRP040447_lung 502 .00 RPM
SRP040447_skeletal_muscle 485 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005296 ortholog_one2many 3 retrogenes
retro_btau_1251, retro_btau_719, retro_btau_789,
Canis familiaris ENSCAFG00000029892 possible_ortholog 3 retrogenes
retro_cfam_1772, retro_cfam_924, retro_cfam_976,
Callithrix jacchus ENSCJAG00000000072 possible_ortholog 16 retrogenes
retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Erinaceus europaeus ENSEEUG00000014071 ortholog_one2one 6 retrogenes
retro_eeur_168, retro_eeur_310, retro_eeur_315, retro_eeur_484, retro_eeur_562, retro_eeur_618,
Echinops telfairi ENSETEG00000017076 possible_ortholog 2 retrogenes
retro_etel_46, retro_etel_853,
Felis catus ENSFCAG00000009194 ortholog_one2one 4 retrogenes
retro_fcat_1197, retro_fcat_1649, retro_fcat_324, retro_fcat_548,
Gorilla gorilla ENSGGOG00000002932 possible_ortholog 11 retrogenes
retro_ggor_12, retro_ggor_1739, retro_ggor_214, retro_ggor_2271, retro_ggor_2737, retro_ggor_334, retro_ggor_6, retro_ggor_615, retro_ggor_627, retro_ggor_846, retro_ggor_869,
Myotis lucifugus ENSMLUG00000004945 ortholog_one2one 10 retrogenes
retro_mluc_1015, retro_mluc_1342, retro_mluc_1836, retro_mluc_1894, retro_mluc_2219, retro_mluc_2221, retro_mluc_2427, retro_mluc_2471, retro_mluc_2506, retro_mluc_675,
Macaca mulatta ENSMMUG00000007551 possible_ortholog 14 retrogenes
retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mus musculus ENSMUSG00000074129 ortholog_one2many 3 retrogenes
retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Oryctolagus cuniculus ENSOCUG00000025258 possible_ortholog 9 retrogenes
retro_ocun_1038, retro_ocun_1077, retro_ocun_1392, retro_ocun_1462, retro_ocun_304, retro_ocun_674, retro_ocun_756, retro_ocun_786, retro_ocun_972,
Otolemur garnettii ENSOGAG00000004625 possible_ortholog 7 retrogenes
retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Ochotona princeps ENSOPRG00000001194 ortholog_one2one 3 retrogenes
retro_opri_316, retro_opri_764, retro_opri_806,
Pongo abelii ENSPPYG00000010251 possible_ortholog 1 retrogene
retro_pabe_148,
Pan troglodytes ENSPTRG00000011298 possible_ortholog 1 retrogene
retro_ptro_31,
Rattus norvegicus ENSRNOG00000020618 ortholog_one2many 10 retrogenes
retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa ENSSSCG00000003166 ortholog_one2many 4 retrogenes
retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,
Tarsius syrichta ENSTSYG00000008791 ortholog_one2one 4 retrogenes
retro_tsyr_1363, retro_tsyr_437, retro_tsyr_620, retro_tsyr_920,
Tursiops truncatus ENSTTRG00000005485 ortholog_one2one 7 retrogenes
retro_ttru_1304, retro_ttru_1736, retro_ttru_629, retro_ttru_735, retro_ttru_833, retro_ttru_971, retro_ttru_995,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_888 57.27 52.94
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2. retro_cpor_1000 80.15 66.67
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Download FASTA sequences of all ENSCPOG00000012417 retrocopies