Parental gene: | RPL13A, ENSOCUG00000025258 |
| Aliases: | None |
| Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | GL019152:63672..64988(+) |
>ENSOCUG00000025258
GGCATGCTGCCGCATAAGACCAAGCGGGGCCAGGCCGCGCTCGACCGGCTCAAGGTGTTCGACGGGATCCCGCCGCCCTA
CGACAAGAAAAAGCGGATGGTGGTGCCCGCGGCGCTGAAGGTGGTGCGGCTGAAGCCCACGCGGAAGTTTGCCTACCTGG
GGCGCCTGGCCCATGAGGTGGGCTGGAAGTACCAGGCCGTGACGGCCACGCTGGAGGAGAAGAGGAAGGAGAAGGCTAAG
ATCCACTACCGGAAGAAGAAGCAGCTCATGAGGCTCCGGAAGCAGGCCGAGAAGAACGTGGAGAAGAAGATCAGCAAGTT
CACGGACGTCCTCAAGACCCACGGGCTCCTGGTCTGA
GGCATGCTGCCGCATAAGACCAAGCGGGGCCAGGCCGCGCTCGACCGGCTCAAGGTGTTCGACGGGATCCCGCCGCCCTA
CGACAAGAAAAAGCGGATGGTGGTGCCCGCGGCGCTGAAGGTGGTGCGGCTGAAGCCCACGCGGAAGTTTGCCTACCTGG
GGCGCCTGGCCCATGAGGTGGGCTGGAAGTACCAGGCCGTGACGGCCACGCTGGAGGAGAAGAGGAAGGAGAAGGCTAAG
ATCCACTACCGGAAGAAGAAGCAGCTCATGAGGCTCCGGAAGCAGGCCGAGAAGAACGTGGAGAAGAAGATCAGCAAGTT
CACGGACGTCCTCAAGACCCACGGGCTCCTGGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 66 .52 RPM |
| SRP017611_kidney | 349 .17 RPM |
| SRP017611_brain | 131 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000014027 | possible_ortholog | 2 retrogenes | |
| Bos taurus | ENSBTAG00000005296 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000029892 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000072 | possible_ortholog | 16 retrogenes | |
| Cavia porcellus | ENSCPOG00000012417 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000015832 | possible_ortholog | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000014071 | possible_ortholog | 6 retrogenes | |
| Echinops telfairi | ENSETEG00000017076 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000009194 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000016213 | ortholog_one2many | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000004945 | possible_ortholog | 10 retrogenes | |
| Mustela putorius furo | ENSMPUG00000002604 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000074129 | possible_ortholog | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000001194 | possible_ortholog | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000004086 | possible_ortholog | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010958 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000020618 | possible_ortholog | 10 retrogenes | |
| Sus scrofa | ENSSSCG00000003166 | possible_ortholog | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000008791 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000005485 | possible_ortholog | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_304 | 72.03 | 99.15 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_674 | 51.90 | 66.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_756 | 63.00 | 83.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_786 | 68.57 | 88.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_972 | 74.67 | 62.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1038 | 63.74 | 76.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ocun_1077 | 71.68 | 93.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ocun_1392 | 75.49 | 85.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ocun_1462 | 65.43 | 68.64 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000025258 retrocopies