Parental gene:

PAICS, ENSCPOG00000010749

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_24:26847512..26859201(+)


>ENSCPOG00000010749
TGTTTTATTTCTACAGTATTGAAAATTGGCAAAAAGCTCTATGAGGGTAAAACAAAAGAAGTCTATGAATTGTTGGATAG
TCCAGGAAAAGTCCTTCTGCAGTCCAAAGACCAGATTACAGCAGGAAATGCGGCCAGAAAGAATCACCTGGAAGGAAAAG
CTGCAATCTCCAATAAGATTACCAGCTGTATTTTTGAGTTGTTACAGGAAGCAGGTATCAAGACTGCTTTCACCAGAAAA
TGTGGGGAGACAGCTTTCATTGCACCCCAGTGTGAAATGATTCCAATTGAATGGGTCTGCAGAAGAATAGCAACTGGTTC
TTTTCTCAAAAGAAATCCTGGCGTCAAGGAAGGATTTAAGTTTTACCCACCTAAAGTGGAGCTATTTTTTAAGGATGATG
CTAATAATGATCCACAGTGGTCTGAAGAACAGCTAATTGCTGCAAAATTTTGCTTTGCTGGACTTGTTATAGGCCAAACT
GAAGTGGATATCATGAGTCATGCTACACAAGCTATTTTTGAAATACTGGAGAAATCCTGGTTGCCCCAGAACTGTACGCT
GGTTGATATGAAGATTGAATTTGGTGTTGATGTGACCACCAAAGAAATTGTTCTCGCTGATGTTATTGACAATGATTCCT
GGAGACTCTGGCCGTCGGGAGATCGAAGCCAGCAGAAAGATAAACAGTCTTACCGCGACCTCAAGGAAGTAACCCCTGAA
GGGCTTCAGATGGTAAAGAAAAACTTTGAGTGGGTTGCAGAGAGAGTAGAGCTGCTTCTGAAATCAGAAAGTCAGTGCAG
GGTTGTAGTTTTGATGGGCTCAACTTCTGATCTTGGTCACTGTGAAAAAATCAAGAAGGCTTGTGGAAATTATGGAATTC
CCTGTGAACTTCGAGTAACATCTGCCCATAAAGGCCCAGATGAAACTCTGAGGATTAAAGCTGAATATGAAGGGGATGGC
ATTCCGACTGTGTTCGTGGCAGTGGCAGGCAGAAGCAATGGTTTAGGCCCAGTGATGTCTGGTAACACTGCCTACCCAGT
TATCAGCTGTCCTCCCCTCACATCCGACTGGGGAGCTCAAGACGTGTGGTCTTCTCTGCGACTACCCAGTGGTCTCGGCT
GTTCCACTATACTTTCTCCAGAAGGATCAGCTCAGTTTGCAGCTCAGATTTTCGGATTAAACAACCACTTGGTATGGGCC
AAACTGCGAGCAAACATACTGAACACATGGATTGCCTTGAAGCAGGCTGACAAGAAAATCAGAGAATGTAATTTCTAA

Library Parental gene expression (RPM)
SRP017611_liver 35 .52 RPM
SRP017611_kidney 104 .69 RPM
SRP017611_brain 20 .65 RPM
SRP040447_lung 29 .41 RPM
SRP040447_skeletal_muscle 27 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010577 ortholog_one2one 1 retrogene
retro_btau_508,
Dasypus novemcinctus ENSDNOG00000013413 ortholog_one2one 1 retrogene
retro_dnov_284,
Echinops telfairi ENSETEG00000015242 ortholog_one2one 2 retrogenes
retro_etel_1918, retro_etel_341,
Homo sapiens ENSG00000128050 ortholog_one2one 3 retrogenes
retro_hsap_3802, retro_hsap_3915, retro_hsap_3927,
Gorilla gorilla ENSGGOG00000024392 ortholog_one2one 1 retrogene
retro_ggor_2643,
Mus musculus ENSMUSG00000029247 ortholog_one2one 6 retrogenes
retro_mmus_1748, retro_mmus_2750, retro_mmus_2858, retro_mmus_3126, retro_mmus_653, retro_mmus_971,
Nomascus leucogenys ENSNLEG00000008786 ortholog_one2one 2 retrogenes
retro_nleu_1274, retro_nleu_2156,
Otolemur garnettii ENSOGAG00000003575 ortholog_one2one 2 retrogenes
retro_ogar_2138, retro_ogar_865,
Procavia capensis ENSPCAG00000008531 ortholog_one2one 1 retrogene
retro_pcap_172,
Pan troglodytes ENSPTRG00000016081 ortholog_one2one 2 retrogenes
retro_ptro_2662, retro_ptro_2670,
Rattus norvegicus ENSRNOG00000002101 ortholog_one2many 3 retrogenes
retro_rnor_1891, retro_rnor_2768, retro_rnor_804,
Tupaia belangeri ENSTBEG00000006751 ortholog_one2one 1 retrogene
retro_tbel_3697,
Tarsius syrichta ENSTSYG00000010497 ortholog_one2one 2 retrogenes
retro_tsyr_2170, retro_tsyr_329,
Drosophila melanogaster FBgn0020513 ortholog_one2many 1 retrogene
retro_dmel_82,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_969 91.02 98.82
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000010749 retrocopies