Parental gene: | ENSCPOG00000005595 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_9:46754363..46772779(-) |
>ENSCPOG00000005595
CTTTTTACAATAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACCGACTTTCTGGCTGAGGATGGAGGGAC
CGGTGGAGGAACCACCTATGTTCCCAAACCAGTCAGCTGGGCTGATGAAACAGATGACCTGGAAGGAGATGTTTCAACCA
CTTGGCACAGTAATGATGATGATGTGTATAGGGCACCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCGCCACCCTACACTGCTTTTCTAGGAAACTTGCCCTATGAAGT
GACAGAAGACTCTATTAAGGAATTCTTTAGAGGCTTAAATATCAGTGCAGTGCGTTTGCCACGTGAACCCAGCAATCCAG
ACAGGTTGAAAGGTTTTGGTTATGCTGAGTTTGAGGACCTGGATTCCCTGCTCAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGATGTTGCTGATCAAGCACAGGATAAAGACCGGGATGATCGTTCTTTCGGGCGAGA
TAGAAATCGAGATTCTGACAAAACAGACACAGACTGGAGGGCACGTCCTGCCACAGACAGCTTTGATGACTATCCACCAA
GAAGAGGTGATGATAGCTTTGGCGACAAGTATCGAGATCGTTATGATTCAGACCGGTACCGTGATGGGTATCGGGATCGG
GATGGCTATCGGGATGGCCCACGCCGGGATATGGATCGATATGGAGGCCGAGATCGATACGATGACCGAGGCAGCAGAGA
CTATGATAGAGGCTATGATTCCAGAATAGGCAGTGGCAGAAGAGCCTTTGGTAGCGGGTACCGTAGAGATGATGATTACA
GAGGAGGAGGAGACCGATATGAAGACCGGTATGACAGACGAGATGATCGACCTTGGGGCTCCAGAGATGATTACTCACGG
GACGATTATAGGCGTGATGACAGAGGTCCCCCCCAAAGACCCAAACTGAACCTAAAGCCTCGGAGTACTCCTAAGGAAGA
TGATTCTTCTGCTAGTACCTCCCAGTCCAGTAGAGCGGCTTCTATCTTTGGAGGGGCAAAGCCTGTTGACACGGCTGCCA
GAGAAAGAGAAGTGGAAGAACGGCTACAGAAAGAGCAGGAGAAGCTGCAACGTCAGCTGGATGAGCCGAAACTAGAACGA
CGGCCTCGGGAAAGACACCCAAGCTGGCGAAGTGAAGAAACTCAGGAACGGGAAAGATCAAGGACAGGAAGCGAATCATC
ACAGACTGGAACCTCAGCCCCATCTGGCAGAAATGCCCGAAGAAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACACTCA
GTAAGGAGGAAGACTGTCACTCTCCAACTTCTAAGCCTCCCAAACCTGATCAGCCTCTAAAAGTAATGCCAGCGCCTCCA
CCGAAGGAGAATGCATGGGTGAAGCGAAGTTCTAACCCTTCTGCTCGATCTCAGAGCTCAGACACAGAGCACCAATCTCC
TACAAGTGGTGGGGGGAAACTAGCTCCAGCTCAGCCTTCTGAGGAGGGACCAGCAAGGAAAGCAGATGAAAATAATGGAA
TGAGTACCCAAAAAGGCCAAACTGGGAACTCCATCCGTGGTCTAGGAGATGGAGGGAACAAAGACCATTGGAAAGAGTCA
GATAGGAAAGATGGCAAAAAGGATCAAGACTCTAGATCTGCACCTGAGCCAAAGAAACTTGAGGAAAATCCAGCCTCTAA
GTTCAGTTCTGCAAGCAAGTATGCTGCTCTCTGCATGGATGGTGAAGATGATAATGAAGGAGAAGACTACACTGAATAG
CTTTTTACAATAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACCGACTTTCTGGCTGAGGATGGAGGGAC
CGGTGGAGGAACCACCTATGTTCCCAAACCAGTCAGCTGGGCTGATGAAACAGATGACCTGGAAGGAGATGTTTCAACCA
CTTGGCACAGTAATGATGATGATGTGTATAGGGCACCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCGCCACCCTACACTGCTTTTCTAGGAAACTTGCCCTATGAAGT
GACAGAAGACTCTATTAAGGAATTCTTTAGAGGCTTAAATATCAGTGCAGTGCGTTTGCCACGTGAACCCAGCAATCCAG
ACAGGTTGAAAGGTTTTGGTTATGCTGAGTTTGAGGACCTGGATTCCCTGCTCAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGATGTTGCTGATCAAGCACAGGATAAAGACCGGGATGATCGTTCTTTCGGGCGAGA
TAGAAATCGAGATTCTGACAAAACAGACACAGACTGGAGGGCACGTCCTGCCACAGACAGCTTTGATGACTATCCACCAA
GAAGAGGTGATGATAGCTTTGGCGACAAGTATCGAGATCGTTATGATTCAGACCGGTACCGTGATGGGTATCGGGATCGG
GATGGCTATCGGGATGGCCCACGCCGGGATATGGATCGATATGGAGGCCGAGATCGATACGATGACCGAGGCAGCAGAGA
CTATGATAGAGGCTATGATTCCAGAATAGGCAGTGGCAGAAGAGCCTTTGGTAGCGGGTACCGTAGAGATGATGATTACA
GAGGAGGAGGAGACCGATATGAAGACCGGTATGACAGACGAGATGATCGACCTTGGGGCTCCAGAGATGATTACTCACGG
GACGATTATAGGCGTGATGACAGAGGTCCCCCCCAAAGACCCAAACTGAACCTAAAGCCTCGGAGTACTCCTAAGGAAGA
TGATTCTTCTGCTAGTACCTCCCAGTCCAGTAGAGCGGCTTCTATCTTTGGAGGGGCAAAGCCTGTTGACACGGCTGCCA
GAGAAAGAGAAGTGGAAGAACGGCTACAGAAAGAGCAGGAGAAGCTGCAACGTCAGCTGGATGAGCCGAAACTAGAACGA
CGGCCTCGGGAAAGACACCCAAGCTGGCGAAGTGAAGAAACTCAGGAACGGGAAAGATCAAGGACAGGAAGCGAATCATC
ACAGACTGGAACCTCAGCCCCATCTGGCAGAAATGCCCGAAGAAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACACTCA
GTAAGGAGGAAGACTGTCACTCTCCAACTTCTAAGCCTCCCAAACCTGATCAGCCTCTAAAAGTAATGCCAGCGCCTCCA
CCGAAGGAGAATGCATGGGTGAAGCGAAGTTCTAACCCTTCTGCTCGATCTCAGAGCTCAGACACAGAGCACCAATCTCC
TACAAGTGGTGGGGGGAAACTAGCTCCAGCTCAGCCTTCTGAGGAGGGACCAGCAAGGAAAGCAGATGAAAATAATGGAA
TGAGTACCCAAAAAGGCCAAACTGGGAACTCCATCCGTGGTCTAGGAGATGGAGGGAACAAAGACCATTGGAAAGAGTCA
GATAGGAAAGATGGCAAAAAGGATCAAGACTCTAGATCTGCACCTGAGCCAAAGAAACTTGAGGAAAATCCAGCCTCTAA
GTTCAGTTCTGCAAGCAAGTATGCTGCTCTCTGCATGGATGGTGAAGATGATAATGAAGGAGAAGACTACACTGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 90 .88 RPM |
| SRP017611_kidney | 93 .38 RPM |
| SRP017611_brain | 70 .40 RPM |
| SRP040447_lung | 98 .49 RPM |
| SRP040447_skeletal_muscle | 104 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012023 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000007117 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001608 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018176 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000063046 | ortholog_one2many | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013695 | ortholog_many2many | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000009534 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012341 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001062 | ortholog_many2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058655 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017727 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000025848 | ortholog_one2many | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010103 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006800 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005423 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012880 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_278 | 90.05 | 99.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_752 | 94.00 | 78.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_937 | 71.59 | 71.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000005595 retrocopies