Parental gene:

ENSCPOG00000005330

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_61:1698220..1718434(+)


>ENSCPOG00000005330
TTTTCTTACCAGGACAGTAATGATGATGCTGAAGATGTTTCACTGTTTGATGCCGAAGAAGAGACAGCTACCAGACCTAA
CAGGTCCAAGATCAGGCATCCAGTGGCATCGTTTTTCCACTTGTTCTTTCGCGTCAGTGCGATTATAGTCTACCTTCTGT
GTGAACTGCTCAGCGGCAGCTTCATTGCCTGTATGGTGACCATTATCTTACTGTTGTCATGTGATTTTTGGACAGTGAAG
AATGTCACGGGTAGACTAATGGTTGGCCTACGCTGGTGGAATCACATTGATGAAGATGGAAAGAGCCACTGGGTGTTTGA
GTCCAGGAAGGCAACTTCTCAAGAGAGTAAAAGTTTTTCAGAGGCTGAATCCAGAATATTTTGGTTAGGACTTATTGCCT
GTCCGGTGCTCTGGGTGATATTCGCCTTTAGTGCCCTTTTCTCCTTCAGATTGAAGTGGTTGGCGGTGGTTATCATGGGT
GTGGTGCTGCAAGGTGCCAACCTGTACGGTTACGTCAAATGTAAGGTGGGCAGCAGGAAGAATTTAACCAGCATGGCTAC
CTCGTATCTCGGGAAGCAGTTTTTAAGACAAAACACTGGAGATGACCAGACTTCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 14 .45 RPM
SRP017611_kidney 16 .85 RPM
SRP017611_brain 5 .75 RPM
SRP040447_lung 12 .51 RPM
SRP040447_skeletal_muscle 3 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000007609 ortholog_one2one 2 retrogenes
retro_dnov_1041, retro_dnov_1390,
Homo sapiens ENSG00000171928 ortholog_one2many 1 retrogene
retro_hsap_2278,
Homo sapiens ENSG00000175106 ortholog_one2many 1 retrogene
retro_hsap_1625,
Loxodonta africana ENSLAFG00000003854 ortholog_one2one 1 retrogene
retro_lafr_465,
Myotis lucifugus ENSMLUG00000002825 ortholog_one2one 1 retrogene
retro_mluc_1484,
Macaca mulatta ENSMMUG00000019203 ortholog_one2many 5 retrogenes
retro_mmul_1032, retro_mmul_2125, retro_mmul_278, retro_mmul_600, retro_mmul_748,
Nomascus leucogenys ENSNLEG00000014658 ortholog_one2many 2 retrogenes
retro_nleu_1961, retro_nleu_2008,
Oryctolagus cuniculus ENSOCUG00000000498 ortholog_one2one 1 retrogene
retro_ocun_759,
Otolemur garnettii ENSOGAG00000012225 ortholog_one2one 1 retrogene
retro_ogar_978,
Pan troglodytes ENSPTRG00000007790 ortholog_one2many 1 retrogene
retro_ptro_20,
Pan troglodytes ENSPTRG00000008796 ortholog_one2many 1 retrogene
retro_ptro_996,
Rattus norvegicus ENSRNOG00000050649 ortholog_one2one 1 retrogene
retro_rnor_636,
Ictidomys tridecemlineatus ENSSTOG00000000642 ortholog_one2one 6 retrogenes
retro_itri_1415, retro_itri_1841, retro_itri_310, retro_itri_473, retro_itri_711, retro_itri_782,
Tarsius syrichta ENSTSYG00000008082 ortholog_one2one 2 retrogenes
retro_tsyr_2000, retro_tsyr_530,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_184 65.75 69.76
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000005330 retrocopies