Parental gene: | GYK, ENSCPOG00000003261 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_78:3930061..3999365(+) |
>ENSCPOG00000003261
ATGGCATCTACGAAGAAAGCAGATTTGGGGCCGTTGGTGGGAGCGGTGGACCAGGGTACCAGTTCGACACGCTTTTTGGT
TTTCAATTCAAAAACAGCTGAACTTCTAAGTCATCATCAAGTGGAAATAAAACAGGAGTTCCCAAGAGAAGGATGGGTGG
AACAAGACCCCAAGGAGATTCTGCAGTCAGTTTACGAATGCATCGAAAAAACATGTGAGAAACTTGGACAACTCAATATT
GACATTTCCAACATAAAAGCTATTGGTGTCAGCAACCAGAGAGAAACCACTGTAGTCTGGGACAAGTTGACTGGAGAGCC
TCTCTACAACGCTGTGGTGTGGCTTGATCTAAGAACCCAGTCTACCGTTGAGAATCTTAGTAAAAGAATTCCAGGAAATA
ATAACTTTGTTAAGTCCAAGACAGGCCTTCCACTTAGCACTTACTTCAGTGCAGTGAAACTTCGCTGGCTCCTTGACAAT
GTGAGAAAAGTGCAAAAGGCTGTTGAAGAAAATAGAGCTCTTTTTGGGACCATTGATTCATGGCTTATTTGGAGTTTAAC
AGGAGGAGTCAATGGAGGGGTTCACTGTACGGATGTAACAAATGCAAGTAGGACAATGCTTTTCAACATTCATTCTTTGG
AATGGGATAAAGAGCTCTGCGAATTTTTTGGTATTCCAATGGAAATTCTCCCAAATGTCCGGAGTTCTTCTGAGATCTAT
GGCTTAATGAAAGCTGGGGCCTTGGAAGGTGTGCCAATATCTGGGTGTTTGGGGGATCAGTCTGCTGCTTTGGTGGGACA
AATGTGCTTCCAGGATGGACAAGCTAAAAACACGTATGGAACAGGGTGTTTCCTCCTGTGCAATACAGGACATAAGTGTG
TATTTTCTGAACATGGCCTTCTAACCACAGTGGCTTACAAGCTTGGCAGAGACAAACCAGTATATTATGCATTAGAGGGT
TCTGTAGCTATAGCTGGTGCTGTTATTCGCTGGCTCAGAGACAATCTTGGAATTATTAAGACTTCAGAGGAAATAGAAAA
ACTTGCTAAAGAAGTTGGTACTTCTTACGGCTGCTACTTTGTCCCAGCATTTTCAGGGTTATATGCACCTTATTGGGAAA
CAAAGTGTATAGGTATTATAATCTGTGGACTTACACAGTTCACCAATAAATGCCATATTGCTTTTGCTGCACTAGAAGCC
GTTTGTTTCCAAACCCGAGAGATTTTGGATGCTATGAATCGCGACTGTGGAATTCCACTCAGTCATTTGCAAGTAGATGG
AGGAATGACCAGCAACAAAATCCTGATGCAGCTACAAGCAGACATTCTGTATATTCCAGTGGTGAAGCCTTCCATGCCGG
AAACCACTGCTCTGGGTGCCGCCATGGCAGCAGGGGCTGCGGAAGGAGTTGGCGTTTGGAGCCTTGAGCCTGAAGATTTG
TCAGCAGTCACAATGGAACGGTTCGAACCTCAAATCAACGCTGAGGAAAGTGAAATTCGTTACTCTACGTGGAAGAAAGC
TGTGATGAAATCAATGGGTTGGGTTACAACTCAGTCTCCTGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCCTTTGG
GCTTTTTTATAGTGAGTAGCATGGTAATGTTTATCGGAGCAAGGTACATCTCAGGTTAG
ATGGCATCTACGAAGAAAGCAGATTTGGGGCCGTTGGTGGGAGCGGTGGACCAGGGTACCAGTTCGACACGCTTTTTGGT
TTTCAATTCAAAAACAGCTGAACTTCTAAGTCATCATCAAGTGGAAATAAAACAGGAGTTCCCAAGAGAAGGATGGGTGG
AACAAGACCCCAAGGAGATTCTGCAGTCAGTTTACGAATGCATCGAAAAAACATGTGAGAAACTTGGACAACTCAATATT
GACATTTCCAACATAAAAGCTATTGGTGTCAGCAACCAGAGAGAAACCACTGTAGTCTGGGACAAGTTGACTGGAGAGCC
TCTCTACAACGCTGTGGTGTGGCTTGATCTAAGAACCCAGTCTACCGTTGAGAATCTTAGTAAAAGAATTCCAGGAAATA
ATAACTTTGTTAAGTCCAAGACAGGCCTTCCACTTAGCACTTACTTCAGTGCAGTGAAACTTCGCTGGCTCCTTGACAAT
GTGAGAAAAGTGCAAAAGGCTGTTGAAGAAAATAGAGCTCTTTTTGGGACCATTGATTCATGGCTTATTTGGAGTTTAAC
AGGAGGAGTCAATGGAGGGGTTCACTGTACGGATGTAACAAATGCAAGTAGGACAATGCTTTTCAACATTCATTCTTTGG
AATGGGATAAAGAGCTCTGCGAATTTTTTGGTATTCCAATGGAAATTCTCCCAAATGTCCGGAGTTCTTCTGAGATCTAT
GGCTTAATGAAAGCTGGGGCCTTGGAAGGTGTGCCAATATCTGGGTGTTTGGGGGATCAGTCTGCTGCTTTGGTGGGACA
AATGTGCTTCCAGGATGGACAAGCTAAAAACACGTATGGAACAGGGTGTTTCCTCCTGTGCAATACAGGACATAAGTGTG
TATTTTCTGAACATGGCCTTCTAACCACAGTGGCTTACAAGCTTGGCAGAGACAAACCAGTATATTATGCATTAGAGGGT
TCTGTAGCTATAGCTGGTGCTGTTATTCGCTGGCTCAGAGACAATCTTGGAATTATTAAGACTTCAGAGGAAATAGAAAA
ACTTGCTAAAGAAGTTGGTACTTCTTACGGCTGCTACTTTGTCCCAGCATTTTCAGGGTTATATGCACCTTATTGGGAAA
CAAAGTGTATAGGTATTATAATCTGTGGACTTACACAGTTCACCAATAAATGCCATATTGCTTTTGCTGCACTAGAAGCC
GTTTGTTTCCAAACCCGAGAGATTTTGGATGCTATGAATCGCGACTGTGGAATTCCACTCAGTCATTTGCAAGTAGATGG
AGGAATGACCAGCAACAAAATCCTGATGCAGCTACAAGCAGACATTCTGTATATTCCAGTGGTGAAGCCTTCCATGCCGG
AAACCACTGCTCTGGGTGCCGCCATGGCAGCAGGGGCTGCGGAAGGAGTTGGCGTTTGGAGCCTTGAGCCTGAAGATTTG
TCAGCAGTCACAATGGAACGGTTCGAACCTCAAATCAACGCTGAGGAAAGTGAAATTCGTTACTCTACGTGGAAGAAAGC
TGTGATGAAATCAATGGGTTGGGTTACAACTCAGTCTCCTGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCCTTTGG
GCTTTTTTATAGTGAGTAGCATGGTAATGTTTATCGGAGCAAGGTACATCTCAGGTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 57 .80 RPM |
| SRP017611_kidney | 27 .64 RPM |
| SRP017611_brain | 10 .53 RPM |
| SRP040447_lung | 42 .02 RPM |
| SRP040447_skeletal_muscle | 4 .64 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009161 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013713 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000007633 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000003599 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008279 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000004264 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000198814 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000007632 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001046 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000002417 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000025059 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010102 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013023 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016952 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000012460 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000034116 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000006470 | ortholog_many2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012202 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000008732 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000008249 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_11 | 82.79 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_20 | 88.02 | 99.82 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000003261 retrocopies