Parental gene: | GK, ENSCJAG00000007633 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | X:29317255..29395495(+) |
>ENSCJAG00000007633
ATGGCAGCCTCAAAGAAGGCAGTTTTGGGGCCATTGGTGGGGGCGGTGGACCAGGGCACCAGTTCGACGCGCTTTTTGGT
TTTCAATTCAAAAACAGCTGAACTACTTAGTCATCATCAAGTGGAAATAAAACAAGAGTTTCCAAGAGAAGGATGGGTGG
AACAGGATCCTAAGGAAATTCTGCATTCTGTCTATGAGTGTATAGAGAAAACATGTGAGAAACTTGGACAGCTCAATATT
GATATTTCCAACATAAAAGCTATTGGCGTCAGCAACCAGAGAGAAACAACTGTAGTCTGGGACAAGTTAACTGGAGAGCC
TCTCTACAATGCTGTGGTGTGGCTTGATCTAAGAACTCAGTCTACCGTTGAGAGTCTTAGTAAAAGAATCCCAGGAAATA
ATAACTTTGTCAAGTCCAAGACAGGCCTTCCACTTAGCACCTACTTCAGTGCAGTGAAACTTCGCTGGCTCCTTGACAAT
GTGAGAAAAGTTCAAAAGGCTGTTGAAGAAAAACGAGCTCTTTTTGGGACCATTGATTCATGGCTTATTTGGAGTTTGAC
AGGAGGAGTCAATGGAGGTGTCCACTGTACAGATGTGACAAATGCAAGTAGAACTATGCTTTTCAACATTCATTCTTTGG
AATGGGATAAACAGCTCTGCGAATTTTTTGGAATTCCAATGGAAATTCTTCCAAATGTCCGGAGTTCTTCTGAGATCTAT
GGCCTAATGAAAGCTGGAGCCTTGGAAGGTGTGCCAATATCTGGGTGTTTAGGGGACCAGTCTGCTGCATTGGTGGGACA
AATGTGCTTCCAGAATGGACAAGCTAAAAATACGTATGGAACAGGATGTTTCTTACTATGTAATACAGGCCATAAGTGTG
TATTTTCTGATCATGGCCTTCTCACCACAGTGGCTTACAAACTTGGAAGAGACAAACCGGTATATTATGCATTGGAAGGT
TCTGTAGCTATAGCTGGTGCTGTTATTCGCTGGCTAAGAGACAATCTTGGAATTATAGAGAGCTCAGAAGAAATTGAAAA
ACTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTACTTTGTCCCAGCATTTTCAGGGTTATATGCACCTTATTGGGAGC
CCAGTGCAAGAGGGATAATCTGCGGACTCACTCAGTTCACCAATAAATGCCATATTGCTTTTGCTGCGTTAGAAGCTGTT
TGTTTCCAAACTCGAGAGATTTTGGATGCCATGAATCGGGACTGTGGAATTCCACTCAGTCATTTGCAGGTGGATGGAGG
AATGACCAGCAACAAAATTCTTATGCAGCTACAAGCAGACATTCTGTATATTCCAGTAGTGAAGCCCTCGATGCCTGAAA
CCACTGCACTGGGTGCTGCCATGGCAGCAGGGGCTGCAGAAGGAGTCGGCGTATGGAGTCTTGAACCCGAAGATTTATCT
GCCGTCACAATGGAGCGGTTTGAACCTCAGATTAATGCTGAGGAAAGTGAAATTCGTTATTCTACATGGAAGAAAGCTGT
GATGAAGTCAATGGGTTGGGTTACAACTCAATCTCCAGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCCCTTGGGCT
TTTTTATAGTGAGTAGCATGGTAATGTTAATCGGAGCAAGGTACATCTCAGGTATTCCATAA
ATGGCAGCCTCAAAGAAGGCAGTTTTGGGGCCATTGGTGGGGGCGGTGGACCAGGGCACCAGTTCGACGCGCTTTTTGGT
TTTCAATTCAAAAACAGCTGAACTACTTAGTCATCATCAAGTGGAAATAAAACAAGAGTTTCCAAGAGAAGGATGGGTGG
AACAGGATCCTAAGGAAATTCTGCATTCTGTCTATGAGTGTATAGAGAAAACATGTGAGAAACTTGGACAGCTCAATATT
GATATTTCCAACATAAAAGCTATTGGCGTCAGCAACCAGAGAGAAACAACTGTAGTCTGGGACAAGTTAACTGGAGAGCC
TCTCTACAATGCTGTGGTGTGGCTTGATCTAAGAACTCAGTCTACCGTTGAGAGTCTTAGTAAAAGAATCCCAGGAAATA
ATAACTTTGTCAAGTCCAAGACAGGCCTTCCACTTAGCACCTACTTCAGTGCAGTGAAACTTCGCTGGCTCCTTGACAAT
GTGAGAAAAGTTCAAAAGGCTGTTGAAGAAAAACGAGCTCTTTTTGGGACCATTGATTCATGGCTTATTTGGAGTTTGAC
AGGAGGAGTCAATGGAGGTGTCCACTGTACAGATGTGACAAATGCAAGTAGAACTATGCTTTTCAACATTCATTCTTTGG
AATGGGATAAACAGCTCTGCGAATTTTTTGGAATTCCAATGGAAATTCTTCCAAATGTCCGGAGTTCTTCTGAGATCTAT
GGCCTAATGAAAGCTGGAGCCTTGGAAGGTGTGCCAATATCTGGGTGTTTAGGGGACCAGTCTGCTGCATTGGTGGGACA
AATGTGCTTCCAGAATGGACAAGCTAAAAATACGTATGGAACAGGATGTTTCTTACTATGTAATACAGGCCATAAGTGTG
TATTTTCTGATCATGGCCTTCTCACCACAGTGGCTTACAAACTTGGAAGAGACAAACCGGTATATTATGCATTGGAAGGT
TCTGTAGCTATAGCTGGTGCTGTTATTCGCTGGCTAAGAGACAATCTTGGAATTATAGAGAGCTCAGAAGAAATTGAAAA
ACTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTACTTTGTCCCAGCATTTTCAGGGTTATATGCACCTTATTGGGAGC
CCAGTGCAAGAGGGATAATCTGCGGACTCACTCAGTTCACCAATAAATGCCATATTGCTTTTGCTGCGTTAGAAGCTGTT
TGTTTCCAAACTCGAGAGATTTTGGATGCCATGAATCGGGACTGTGGAATTCCACTCAGTCATTTGCAGGTGGATGGAGG
AATGACCAGCAACAAAATTCTTATGCAGCTACAAGCAGACATTCTGTATATTCCAGTAGTGAAGCCCTCGATGCCTGAAA
CCACTGCACTGGGTGCTGCCATGGCAGCAGGGGCTGCAGAAGGAGTCGGCGTATGGAGTCTTGAACCCGAAGATTTATCT
GCCGTCACAATGGAGCGGTTTGAACCTCAGATTAATGCTGAGGAAAGTGAAATTCGTTATTCTACATGGAAGAAAGCTGT
GATGAAGTCAATGGGTTGGGTTACAACTCAATCTCCAGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCCCTTGGGCT
TTTTTATAGTGAGTAGCATGGTAATGTTAATCGGAGCAAGGTACATCTCAGGTATTCCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 8 .76 RPM |
| SRP051959_skeletal_muscle | 1 .92 RPM |
| SRP051959_lymph_node | 4 .09 RPM |
| SRP051959_lung | 14 .61 RPM |
| SRP051959_liver | 25 .47 RPM |
| SRP051959_kidney | 47 .17 RPM |
| SRP051959_heart | 6 .44 RPM |
| SRP051959_colon | 23 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001924 | within_species_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003261 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000008279 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000004264 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000198814 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000007632 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002417 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000025059 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010102 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013023 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000034116 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000006470 | ortholog_many2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000008732 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000008249 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_125 | 88.61 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3161 | 96.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_4035 | 96.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007633 retrocopies