RetrogeneDB ID: retro_mluc_151

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:1766057..1767719(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013156
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: GK
• Ensembl ID: ENSMLUG00000001046
• Aliases: None
• Description: None

Sequence

>retro_mluc_151
TTCATGGCAGCCCCGAAGTCGGTTGGGGAGTTCTTGGTGGGGGGAGTGGTCCAGGAGACGAACTCCTCTCGTTTTCTGGT
TTTCAATCCCAAAACAGCCGAGCTACTTGGTCAACATCAAGTGAGAATATCACAAGAGCTTCCAAAAGAAGAATGGGTGG
AACAGGACCCGAACGAAATTATTCAGTCTGTCTTTGAGTGCATAGAGAAAACGTGTGAGCAGCTTAGCGAACTGAATATT
GATATATCCAACATAAAAGCCATCGGCATCAGCAACCAGAGGGAAACCACTCTAGTCTGGGACAGGCTGACCGGAGAGCC
GCTCTACAACGCTATCGCCTGGCTGGACCTGAGGACCCAGTCTACCGTGGAGAAACTGAGCAAAAAAATTCCAGGAAATA
ATAACTTTGTCAAGTCCAAGACAGGCCTTCCCCTGAGCACTTACTTCAGCGCCGTGAAACTTCGTTGGCTGCTGGACAAT
GTGGAAACCGTTCAAAGGGCTGTGAAAGAACGGAGAGCCCTCTTTGGGACCGTTGACTCCTGGCTCATCTGGAACCTGAC
GGGAGGCGCGGAGGGAGGCGTCCACTGCACGGATGTGACAAATGCAAGCAGGACGATGCTCTTCAACATCCACTCTTTGG
AATGGGATAAGGAGCTCTGTGACTTTTTTGAAATTCCAATGAACATTCTTCCCAACGTCTGCAGTTCTTCTGAGATCTAT
GGCCAAATGAAGGCTGGGTCCTTAGAAGGGGTGCCCATATCTGGGTGTTTGGGGGACCAGTCTGCTGCATTGGTGGGACA
GTTGTGCTTCCAGGAAGGGCAAGCCAAAAACACGTATGGAGCAGGTTGCTTCTTACTGTGTAACACCGGCCGTAAGTGTG
TGTTTTCTGACCACGGCCTTGTGACCACAGTGGCTTACAAATTAGGCAAAAACAAGCCAGCATGTTATGCACTGGAAGGT
TCGGTTGCTATAGCCGGTGAAGTTATTCGCTGGCTAAAAGACAATCTTGGAATTATAGAGTCCTCAGAAGAAATTGAAGA
ACTTGCTAAGGAAGCAGGTACTTCTTATGGCTGCTACTTCATCCCAGCCTTTTCAGGGTTATATGCACCTCATTGGGATT
CCAGCGCCAGAGGGATCATCTGTGGGCTCACTCAGTTCACCAATAAAAGTCATATTGCTTTTGCTGCGTTAGAAGCTGTT
TGTTTCCAAACCCGAGAGATTTTGGATGCCATGAACCGTGACTGTGGAATTCCACTCAGCCATTTGCAGGTGGATGGGAA
AATGACCAAAAACAAAATTCTTATGCAACTACAAGCAGACATTCTGCGGATTCCAGTAATGAAGCCCACTGTAGCTGACA
CAACCGCACTGGGAGCCGCCATGGCAGCGGGAGCTGCAGAAGGGGTGGGCGTTTGGAGTCTTAAGCCCGAGGATTTGTCA
GCCGTGGTGATGGAACGGATTGAGCCACAGATCAATGCCATGGAAAGCGACACTCGTTATTCTACATGGAAGAAAGCTAC
GCAGAAGTCAATGGGCTGGATTACAACTCAGACTCTTGAAAGTACTGTTTCCCCTGCCTTCTCTAGTCTGCCCTTGGGCT
TTTTCATAGTGAGTAGCCTGCTGATGCTAATTGGAGCAAGGTACATCTCCGGTATGCCATAA

Alignment

ORF - retro_mluc_151 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.06 %
• Parental protein coverage: 99.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILMSVYECIEKTC
          AA.K.V...LVG.V.Q.T.S.RFLVFN.KTAELL..HQV.I.QE.P.E.WVEQDP.EI..SV.ECIEKTC
Retrocopy AAPKSVGEFLVGGVVQETNSSRFLVFNPKTAELLGQHQVRISQELPKEEWVEQDPNEIIQSVFECIEKTC

Parental  EKLEQLNIDISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVDNLSKRIPGNN-FLKSKTG
          E.L..LNIDISNIKAIG.SNQRETT.VWD..TGEPLYNA..WLDLRTQSTV..LSK.IPGNN.F.KSKTG
Retrocopy EQLSELNIDISNIKAIGISNQRETTLVWDRLTGEPLYNAIAWLDLRTQSTVEKLSKKIPGNNNFVKSKTG

Parental  LPLSTYFSAVKVRWLLDNVKEVQRAVEEDRALFGTIDSWLIWCLTGGTNGGVHCTDVTNASRTMLFNIHS
          LPLSTYFSAVK.RWLLDNV..VQRAV.E.RALFGT.DSWLIW.LTGG..GGVHCTDVTNASRTMLFNIHS
Retrocopy LPLSTYFSAVKLRWLLDNVETVQRAVKERRALFGTVDSWLIWNLTGGAEGGVHCTDVTNASRTMLFNIHS

Parental  LEWDKELCEFFEIPMKILPNVRSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFRDGQAKNTYGTG
          LEWDKELC.FFEIPM.ILPNV.SSSEIYG.MKAG.LEGVPISGCLGDQSAALVGQ.CF..GQAKNTYG.G
Retrocopy LEWDKELCDFFEIPMNILPNVCSSSEIYGQMKAGSLEGVPISGCLGDQSAALVGQLCFQEGQAKNTYGAG

Parental  CFLLCNTGRKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIINSSDEIEKLAKEV
          CFLLCNTGRKCVFS.HGL.TTVAYKLG..KP..YALEGSVAIAG.VIRWL.DNLGII.SS.EIE.LAKE.
Retrocopy CFLLCNTGRKCVFSDHGLVTTVAYKLGKNKPACYALEGSVAIAGEVIRWLKDNLGIIESSEEIEELAKEA

Parental  GTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLSHL
          GTSYGCYF.PAFSGLYAP.W..SARGIICGLTQFTNK.HIAFAALEAVCFQTREILDAMNRDCGIPLSHL
Retrocopy GTSYGCYFIPAFSGLYAPHWDSSARGIICGLTQFTNKSHIAFAALEAVCFQTREILDAMNRDCGIPLSHL

Parental  QVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLEPEDLSAVTVERFEPQIN
          QVDG.MT.NKILMQLQADIL.IPV.KP....TTALGAAMAAGAAEGVGVWSL.PEDLSAV..ER.EPQIN
Retrocopy QVDGKMTKNKILMQLQADILRIPVMKPTVADTTALGAAMAAGAAEGVGVWSLKPEDLSAVVMERIEPQIN

Parental  AEESEIRFSTWKKAVMKSMGWVTAESSESSDPSIFCSLPLGFFIMSSMIMFIGARYISG
          A.ES..R.STWKKA..KSMGW.T....ES.....F.SLPLGFFI.SS..M.IGARYISG
Retrocopy AMESDTRYSTWKKATQKSMGWITTQTLESTVSPAFSSLPLGFFIVSSLLMLIGARYISG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_151 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009161	1 retrocopy	retro_amel_45,
Canis familiaris	ENSCAFG00000013713	1 retrocopy	retro_cfam_19,
Cavia porcellus	ENSCPOG00000003261	2 retrocopies	retro_cpor_11, retro_cpor_20,
Equus caballus	ENSECAG00000003599	1 retrocopy	retro_ecab_9,
Felis catus	ENSFCAG00000004264	1 retrocopy	retro_fcat_140,
Myotis lucifugus	ENSMLUG00000001046	2 retrocopies	retro_mluc_151 , retro_mluc_853,
Monodelphis domestica	ENSMODG00000002417	1 retrocopy	retro_mdom_234,
Oryctolagus cuniculus	ENSOCUG00000013023	2 retrocopies	retro_ocun_2, retro_ocun_81,
Sarcophilus harrisii	ENSSHAG00000006470	1 retrocopy	retro_shar_35,