Parental gene:

PTGES3, ENSCPOG00000000057

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:41579131..41585405(+)


>ENSCPOG00000000057
CAGCCTGCTTCTGCAAAGTGGTATGATCGAAGGGACTATGTCTTCATTGAATTTTGTGTTGAAGATAGTAAAGATGTTAA
TGTAAACTTTGAAAAATCCAAACTTACTTTCAGTTGTCTTGGAGGAAGCGATAATTTTAAACATTTAAATGAAATTGATC
TTTTTCACTGTATTGATCCAAGTGAGTCTAAGCATAAAAGAACAGACAGATCAATTTTATGTTGTTTACGAAAAGGAGAA
TCTGGCCAGTCATGGCCTAGGTTAACAAAAGAAAGGGCAAAGCTTAATTGGCTTAGTGTGGACTTCAATAATTGGAAAGA
CTGGGAGGATGATTCTGATGAAGACATGTCTAATTTTGATCGCTTCTCTGAGATGATGAACAACATGGGTGGTGATGAGG
ATGTAGATTTACCAGAAGTGGATGGAGCAGATGATGATTCACAAGACAGTGATGATGAA

Library Parental gene expression (RPM)
SRP017611_liver 81 .18 RPM
SRP017611_kidney 58 .62 RPM
SRP017611_brain 37 .73 RPM
SRP040447_lung 40 .93 RPM
SRP040447_skeletal_muscle 25 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004172 ortholog_one2one 1 retrogene
retro_amel_1835,
Bos taurus ENSBTAG00000017967 ortholog_one2one 2 retrogenes
retro_btau_1766, retro_btau_275,
Choloepus hoffmanni ENSCHOG00000006514 ortholog_one2one 1 retrogene
retro_chof_1336,
Callithrix jacchus ENSCJAG00000010724 ortholog_one2one 6 retrogenes
retro_cjac_1001, retro_cjac_1304, retro_cjac_2122, retro_cjac_3826, retro_cjac_473, retro_cjac_942,
Dasypus novemcinctus ENSDNOG00000011310 ortholog_one2one 4 retrogenes
retro_dnov_2088, retro_dnov_2571, retro_dnov_472, retro_dnov_969,
Dipodomys ordii ENSDORG00000000964 ortholog_one2one 2 retrogenes
retro_dord_600, retro_dord_94,
Echinops telfairi ENSETEG00000000024 ortholog_one2many 1 retrogene
retro_etel_1612,
Homo sapiens ENSG00000110958 ortholog_one2one 5 retrogenes
retro_hsap_2084, retro_hsap_3122, retro_hsap_417, retro_hsap_618, retro_hsap_623,
Gorilla gorilla ENSGGOG00000027957 ortholog_one2many 5 retrogenes
retro_ggor_111, retro_ggor_135, retro_ggor_154, retro_ggor_542, retro_ggor_546,
Loxodonta africana ENSLAFG00000008268 ortholog_one2one 1 retrogene
retro_lafr_490,
Macropus eugenii ENSMEUG00000001288 ortholog_one2one 1 retrogene
retro_meug_264,
Myotis lucifugus ENSMLUG00000015927 ortholog_one2one 3 retrogenes
retro_mluc_1111, retro_mluc_2120, retro_mluc_836,
Macaca mulatta ENSMMUG00000013766 ortholog_one2one 6 retrogenes
retro_mmul_1054, retro_mmul_1988, retro_mmul_2239, retro_mmul_2421, retro_mmul_679, retro_mmul_978,
Mus musculus ENSMUSG00000071072 ortholog_one2one 2 retrogenes
retro_mmus_2441, retro_mmus_2757,
Nomascus leucogenys ENSNLEG00000017454 ortholog_one2many 3 retrogenes
retro_nleu_2133, retro_nleu_2486, retro_nleu_446,
Otolemur garnettii ENSOGAG00000028667 ortholog_one2one 3 retrogenes
retro_ogar_1035, retro_ogar_1748, retro_ogar_2858,
Procavia capensis ENSPCAG00000007779 ortholog_one2one 2 retrogenes
retro_pcap_29, retro_pcap_434,
Pongo abelii ENSPPYG00000004669 ortholog_one2many 4 retrogenes
retro_pabe_2010, retro_pabe_2579, retro_pabe_5, retro_pabe_553,
Pan troglodytes ENSPTRG00000005108 ortholog_one2one 8 retrogenes
retro_ptro_1533, retro_ptro_1945, retro_ptro_2111, retro_ptro_2926, retro_ptro_319, retro_ptro_452, retro_ptro_454, retro_ptro_609,
Rattus norvegicus ENSRNOG00000002642 ortholog_one2many 5 retrogenes
retro_rnor_1011, retro_rnor_119, retro_rnor_1836, retro_rnor_1931, retro_rnor_2895,
Sorex araneus ENSSARG00000007751 ortholog_one2one 2 retrogenes
retro_sara_489, retro_sara_507,
Tupaia belangeri ENSTBEG00000002994 ortholog_one2one 15 retrogenes
retro_tbel_1658, retro_tbel_2266, retro_tbel_2370, retro_tbel_2383, retro_tbel_2598, retro_tbel_2622, retro_tbel_2823, retro_tbel_3798, retro_tbel_402, retro_tbel_407, retro_tbel_4279, retro_tbel_4432, retro_tbel_4461, retro_tbel_450, retro_tbel_997,
Tarsius syrichta ENSTSYG00000009622 ortholog_one2one 2 retrogenes
retro_tsyr_1264, retro_tsyr_177,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_183 56.25 61.44
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2. retro_cpor_523 77.89 61.44
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Download FASTA sequences of all ENSCPOG00000000057 retrocopies