Parental gene:

TMED10, ENSCJAG00000020627

Aliases:None
Description:transmembrane emp24-like trafficking protein 10 (yeast) [Source:HGNC Symbol;Acc:16998]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:100413239..100457749(-)


>ENSCJAG00000020627
GAAAGAGTCTCCAGCACCATGTCTGGTTTGTCTGGCCCACCAGCCCGGCGTGGCCCTCGTCCGTTGGCGTTGCTGCTTTT
GTTCCTGCTCGGCCCCAGCTTGGTCCTCGCCATCTCCTTCCATCTGCCCATTAACTCTCGCAAGTGCCTCCGTGAGGAGA
TCCACAAGGACCTGCTAGTGACGGGCGCGTACGAGATCTCCGACCAGTCTGGGGGCGCTGGCGGCCTGCGCAGCCACCTC
AAGATCACAGATTCTGCTGGCCATATTCTCTACTCCAAAGAGGATGCAACCAAGGGGAAATTTGCCTTTACCACTGAAGA
TTATGACATGTTTGAAGTATGTTTTGAGAGCAAGGGAACAGGGCGGATACCTGACCAACTCGTGATCCTAGACATGAAGC
ATGGAGTGGAGGCGAAAAATTACGAAGAGATTGCAAAAGTTGAGAAGCTCAAACCATTAGAGGTGGAGCTGCGACGCCTA
GAAGACCTTTCAGAATCTATTGTTAATGATTTTGCCTACATGAAGAAGAGAGAAGAGGAGATGCGTGATACCAATGAGTC
AACAAACACTCGGGTCCTATACTTCAGCATCTTTTCAATGTTCTGCCTCATTGGACTAGCCACCTGGCAGGTCTTCTACC
TGCGACGCTTCTTCAAGGCCAAGAAGTTGATTGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 42 .25 RPM
SRP051959_skeletal_muscle 36 .10 RPM
SRP051959_lymph_node 33 .22 RPM
SRP051959_lung 35 .40 RPM
SRP051959_liver 60 .65 RPM
SRP051959_kidney 40 .98 RPM
SRP051959_heart 35 .50 RPM
SRP051959_colon 43 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016899 ortholog_one2one 1 retrogene
retro_acar_187,
Dasypus novemcinctus ENSDNOG00000019851 ortholog_one2one 1 retrogene
retro_dnov_1225,
Echinops telfairi ENSETEG00000010607 possible_ortholog 1 retrogene
retro_etel_1798,
Homo sapiens ENSG00000170348 ortholog_one2one 2 retrogenes
retro_hsap_2701, retro_hsap_4014,
Gorilla gorilla ENSGGOG00000007453 ortholog_one2one 1 retrogene
retro_ggor_2696,
Myotis lucifugus ENSMLUG00000017125 ortholog_one2many 2 retrogenes
retro_mluc_2079, retro_mluc_2093,
Macaca mulatta ENSMMUG00000015168 ortholog_one2one 2 retrogenes
retro_mmul_2316, retro_mmul_885,
Mus musculus ENSMUSG00000021248 ortholog_one2one 2 retrogenes
retro_mmus_1093, retro_mmus_649,
Nomascus leucogenys ENSNLEG00000016453 ortholog_one2one 2 retrogenes
retro_nleu_2897, retro_nleu_2963,
Oryctolagus cuniculus ENSOCUG00000004669 ortholog_one2one 1 retrogene
retro_ocun_875,
Pongo abelii ENSPPYG00000029389 ortholog_one2one 1 retrogene
retro_pabe_3296,
Pan troglodytes ENSPTRG00000006552 ortholog_one2one 2 retrogenes
retro_ptro_1823, retro_ptro_2724,
Rattus norvegicus ENSRNOG00000007901 ortholog_one2one 2 retrogenes
retro_rnor_1729, retro_rnor_2031,
Ictidomys tridecemlineatus ENSSTOG00000007392 ortholog_one2one 1 retrogene
retro_itri_362,
Vicugna pacos ENSVPAG00000003089 ortholog_one2one 1 retrogene
retro_vpac_573,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1409 77.29 89.78
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2. retro_cjac_4223 82.82 100.00
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Download FASTA sequences of all ENSCJAG00000020627 retrocopies