Parental gene:

RPS19, ENSCJAG00000020243

Aliases:None
Description:ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:34791818..34802247(+)


>ENSCJAG00000020243
TCCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGT
TAGAGCTCTGGCAGCCTTTCTCAAAAAGTCCGGGAAGCTGAAAGTCCCTGAATGGGTGGACACCGTCAAGCTGGCCAAGC
ACAAAGAGCTTGCTCCCTACGATGAGAACTGGTTCTACACGCGAGCTGCTTCCACAGCGCGGCACCTGTACCTCCGGGGT
GGCGCTGGGGTTGGCTCCATGACCAAGATATATGGGGGACGTCAGAGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGG
CTCCAAGAGCGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGGGGCCGCA
AACTGACACCTCAGGGACAGAGAGATCTGGACAGAATCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAG

Library Parental gene expression (RPM)
SRP051959_spleen 106 .66 RPM
SRP051959_skeletal_muscle 70 .93 RPM
SRP051959_lymph_node 147 .14 RPM
SRP051959_lung 81 .06 RPM
SRP051959_liver 101 .61 RPM
SRP051959_kidney 60 .21 RPM
SRP051959_heart 54 .01 RPM
SRP051959_colon 96 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004456 possible_ortholog 4 retrogenes
retro_amel_1418, retro_amel_1816, retro_amel_193, retro_amel_550,
Bos taurus ENSBTAG00000011963 possible_ortholog 2 retrogenes
retro_btau_722, retro_btau_77,
Canis familiaris ENSCAFG00000028485 possible_ortholog 10 retrogenes
retro_cfam_1017, retro_cfam_1074, retro_cfam_1155, retro_cfam_1251, retro_cfam_1377, retro_cfam_149, retro_cfam_1998, retro_cfam_2212, retro_cfam_249, retro_cfam_499,
Cavia porcellus ENSCPOG00000025140 possible_ortholog 1 retrogene
retro_cpor_1018,
Dasypus novemcinctus ENSDNOG00000002376 ortholog_one2many 4 retrogenes
retro_dnov_1084, retro_dnov_1124, retro_dnov_1838, retro_dnov_2456,
Equus caballus ENSECAG00000009738 ortholog_one2many 2 retrogenes
retro_ecab_263, retro_ecab_815,
Erinaceus europaeus ENSEEUG00000013614 possible_ortholog 4 retrogenes
retro_eeur_252, retro_eeur_259, retro_eeur_318, retro_eeur_385,
Felis catus ENSFCAG00000008125 possible_ortholog 3 retrogenes
retro_fcat_2026, retro_fcat_543, retro_fcat_816,
Homo sapiens ENSG00000105372 ortholog_one2one 5 retrogenes
retro_hsap_1400, retro_hsap_2417, retro_hsap_3174, retro_hsap_3642, retro_hsap_667,
Gorilla gorilla ENSGGOG00000015279 possible_ortholog 4 retrogenes
retro_ggor_1085, retro_ggor_1503, retro_ggor_2458, retro_ggor_578,
Myotis lucifugus ENSMLUG00000006143 possible_ortholog 5 retrogenes
retro_mluc_1316, retro_mluc_2247, retro_mluc_2426, retro_mluc_980, retro_mluc_987,
Macaca mulatta ENSMMUG00000013429 ortholog_one2many 8 retrogenes
retro_mmul_1201, retro_mmul_1358, retro_mmul_1807, retro_mmul_2007, retro_mmul_2443, retro_mmul_404, retro_mmul_607, retro_mmul_691,
Monodelphis domestica ENSMODG00000010067 ortholog_one2many 3 retrogenes
retro_mdom_1531, retro_mdom_1888, retro_mdom_883,
Mustela putorius furo ENSMPUG00000007164 ortholog_one2many 4 retrogenes
retro_mputfur_1071, retro_mputfur_1148, retro_mputfur_1470, retro_mputfur_1503,
Mus musculus ENSMUSG00000040952 possible_ortholog 15 retrogenes
retro_mmus_1206, retro_mmus_1207, retro_mmus_1528, retro_mmus_1711, retro_mmus_1713, retro_mmus_2095, retro_mmus_2295, retro_mmus_2535, retro_mmus_2850, retro_mmus_3337, retro_mmus_3499, retro_mmus_639, retro_mmus_643, retro_mmus_684, retro_mmus_899,
Otolemur garnettii ENSOGAG00000026255 ortholog_one2many 3 retrogenes
retro_ogar_1315, retro_ogar_1663, retro_ogar_2305,
Pongo abelii ENSPPYG00000010029 possible_ortholog 7 retrogenes
retro_pabe_1158, retro_pabe_1754, retro_pabe_1781, retro_pabe_2636, retro_pabe_430, retro_pabe_585, retro_pabe_586,
Pan troglodytes ENSPTRG00000011037 possible_ortholog 6 retrogenes
retro_ptro_1392, retro_ptro_2269, retro_ptro_2467, retro_ptro_485, retro_ptro_612, retro_ptro_961,
Pteropus vampyrus ENSPVAG00000008980 possible_ortholog 4 retrogenes
retro_pvam_1032, retro_pvam_1171, retro_pvam_137, retro_pvam_895,
Rattus norvegicus ENSRNOG00000048199 possible_ortholog 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sarcophilus harrisii ENSSHAG00000006831 possible_ortholog 1 retrogene
retro_shar_731,
Sus scrofa ENSSSCG00000003042 possible_ortholog 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,
Ictidomys tridecemlineatus ENSSTOG00000003502 ortholog_one2many 3 retrogenes
retro_itri_256, retro_itri_751, retro_itri_872,
Tupaia belangeri ENSTBEG00000003457 possible_ortholog 21 retrogenes
retro_tbel_103, retro_tbel_1275, retro_tbel_1575, retro_tbel_1748, retro_tbel_1803, retro_tbel_1888, retro_tbel_2104, retro_tbel_2521, retro_tbel_2554, retro_tbel_2971, retro_tbel_3008, retro_tbel_3339, retro_tbel_3388, retro_tbel_345, retro_tbel_3607, retro_tbel_3860, retro_tbel_4425, retro_tbel_673, retro_tbel_875, retro_tbel_913, retro_tbel_945,
Tursiops truncatus ENSTTRG00000008278 possible_ortholog 5 retrogenes
retro_ttru_1308, retro_ttru_1608, retro_ttru_1686, retro_ttru_336, retro_ttru_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3 100.00 92.36
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2. retro_cjac_1968 72.33 99.36
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3. retro_cjac_2004 96.77 98.73
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4. retro_cjac_2094 87.97 100.00
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5. retro_cjac_2324 92.26 98.73
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Download FASTA sequences of all ENSCJAG00000020243 retrocopies