Parental gene:

SRP19, ENSCJAG00000016512

Aliases:None
Description:signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:94089992..94097228(-)


>ENSCJAG00000016512
ATGGCTTGTGCTTCCGCGCGCTCCCCGGCCGACCAGGACAGGTTTATTTGTATCTATCCTGCTTATTTAAATAATAAGAA
GACCATTGCAGAGGGAAGGCGAATCCCCATAAGTAAGGCTGTTGAAAATCCTACAGCTGCAGAGATACAAGATGTATGTT
CAGCAGTTGGACTTAATGTATTTCTTGAGAAAAATAAAATGTACTCTAGAGAATGGAATCGTGATGTCCAATACAGAGGC
AGAGTCCGGGTCCAGCTCAAACAGGAAGATGGCAGCCTCTGCCTTGTACAGTTCCCATCACGTAAGTCAGTAATGTTGTA
TGCAGCAGAAATGATACCTAAACTAAAAACAAGGACACAAAAAACAGGAGGTGGTGACCCAAGTCTTCAACAAGGAGAGG
GAAGTAAAAAAGGGAAAGGAAAGAAAAAGAAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 16 .70 RPM
SRP051959_skeletal_muscle 10 .59 RPM
SRP051959_lymph_node 16 .87 RPM
SRP051959_lung 15 .44 RPM
SRP051959_liver 15 .01 RPM
SRP051959_kidney 13 .11 RPM
SRP051959_heart 12 .19 RPM
SRP051959_colon 11 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000031549 ortholog_one2one 5 retrogenes
retro_cfam_1207, retro_cfam_1717, retro_cfam_1791, retro_cfam_2174, retro_cfam_848,
Choloepus hoffmanni ENSCHOG00000013452 ortholog_one2one 2 retrogenes
retro_chof_2525, retro_chof_636,
Equus caballus ENSECAG00000008895 ortholog_one2one 1 retrogene
retro_ecab_503,
Erinaceus europaeus ENSEEUG00000007298 ortholog_one2many 2 retrogenes
retro_eeur_593, retro_eeur_646,
Echinops telfairi ENSETEG00000017132 ortholog_one2one 4 retrogenes
retro_etel_1016, retro_etel_119, retro_etel_1268, retro_etel_1599,
Felis catus ENSFCAG00000025895 ortholog_one2one 1 retrogene
retro_fcat_1732,
Homo sapiens ENSG00000153037 ortholog_one2one 1 retrogene
retro_hsap_835,
Macropus eugenii ENSMEUG00000012529 ortholog_one2one 2 retrogenes
retro_meug_1220, retro_meug_1596,
Microcebus murinus ENSMICG00000000399 ortholog_one2many 1 retrogene
retro_mmur_502,
Myotis lucifugus ENSMLUG00000014793 ortholog_one2many 3 retrogenes
retro_mluc_1097, retro_mluc_350, retro_mluc_710,
Macaca mulatta ENSMMUG00000000331 ortholog_one2many 2 retrogenes
retro_mmul_1088, retro_mmul_1970,
Monodelphis domestica ENSMODG00000013278 ortholog_one2one 3 retrogenes
retro_mdom_1366, retro_mdom_1880, retro_mdom_663,
Mustela putorius furo ENSMPUG00000012695 ortholog_one2one 2 retrogenes
retro_mputfur_602, retro_mputfur_706,
Mus musculus ENSMUSG00000014504 ortholog_one2one 3 retrogenes
retro_mmus_1680, retro_mmus_3241, retro_mmus_686,
Nomascus leucogenys ENSNLEG00000011571 ortholog_one2one 1 retrogene
retro_nleu_3068,
Oryctolagus cuniculus ENSOCUG00000015639 ortholog_one2one 3 retrogenes
retro_ocun_1003, retro_ocun_1548, retro_ocun_729,
Otolemur garnettii ENSOGAG00000008579 ortholog_one2one 1 retrogene
retro_ogar_2070,
Ochotona princeps ENSOPRG00000010549 ortholog_one2one 3 retrogenes
retro_opri_400, retro_opri_75, retro_opri_793,
Pongo abelii ENSPPYG00000029584 ortholog_one2one 1 retrogene
retro_pabe_1569,
Pteropus vampyrus ENSPVAG00000004895 ortholog_one2one 1 retrogene
retro_pvam_1465,
Rattus norvegicus ENSRNOG00000020204 ortholog_one2one 2 retrogenes
retro_rnor_1340, retro_rnor_997,
Ictidomys tridecemlineatus ENSSTOG00000000348 ortholog_one2one 2 retrogenes
retro_itri_318, retro_itri_831,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_886 65.25 97.22
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2. retro_cjac_1117 81.63 68.06
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3. retro_cjac_3059 71.07 84.03
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4. retro_cjac_3144 83.33 99.31
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Download FASTA sequences of all ENSCJAG00000016512 retrocopies