Parental gene:

SRP19, ENSCAFG00000031549

Aliases:None
Description:Canis lupus familiaris signal recognition particle 19kDa (SRP19), mRNA. [Source:RefSeq mRNA;Acc:NM_001252291]
Organism:Dog (Canis familiaris)
Coordinates:3:239650..245078(-)


>ENSCAFG00000031549
ATGGCGTGCGCCGCCGCGCGGTCCCCGGCCGAGCAGGACAGGTTCATCTGCATCTACCCCGCGTACCTGAACAACAAGAA
GACCATCGCCGAGGGCCGGCGCATCCCCATCAGCAAGGCTGTTGAAAATCCTACAGCTACTGAGATTCAAGATGTGTGCT
CAGCAGTTGGACTTAATGTATTCCTTGAGAAAAATAAAATGTACTCTAGAGAGTGGAATCGTGATGTTCAGTACAGGGGC
AGAGTCCGGGTCCAACTCAAGCAGGAAGACGGCAGCCTCTGTCTCGTACAGTTCCCATCACGTAAGTCAGTAATGTTGTA
TGCAGCAGAAATGATACCTAAACTAAAAACAAGGACACAAAAAACAGGAGGTGGGGACCAAAGTCTTCAGCAAGGAGAGG
GAAGTAAAAAAGGAAAAGGAAAGAAGAAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 3 .97 RPM
SRP017611_kidney 10 .37 RPM
SRP017611_liver 3 .19 RPM
SRP012049_cerebellum 4 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013452 ortholog_one2one 2 retrogenes
retro_chof_2525, retro_chof_636,
Callithrix jacchus ENSCJAG00000016512 ortholog_one2one 4 retrogenes
retro_cjac_1117, retro_cjac_3059, retro_cjac_3144, retro_cjac_886,
Equus caballus ENSECAG00000008895 ortholog_one2one 1 retrogene
retro_ecab_503,
Erinaceus europaeus ENSEEUG00000007298 ortholog_one2many 2 retrogenes
retro_eeur_593, retro_eeur_646,
Echinops telfairi ENSETEG00000017132 ortholog_one2one 4 retrogenes
retro_etel_1016, retro_etel_119, retro_etel_1268, retro_etel_1599,
Felis catus ENSFCAG00000025895 ortholog_one2one 1 retrogene
retro_fcat_1732,
Homo sapiens ENSG00000153037 ortholog_one2one 1 retrogene
retro_hsap_835,
Macropus eugenii ENSMEUG00000012529 ortholog_one2one 2 retrogenes
retro_meug_1220, retro_meug_1596,
Microcebus murinus ENSMICG00000000399 ortholog_one2many 1 retrogene
retro_mmur_502,
Myotis lucifugus ENSMLUG00000014793 ortholog_one2many 3 retrogenes
retro_mluc_1097, retro_mluc_350, retro_mluc_710,
Macaca mulatta ENSMMUG00000000331 ortholog_one2many 2 retrogenes
retro_mmul_1088, retro_mmul_1970,
Monodelphis domestica ENSMODG00000013278 ortholog_one2one 3 retrogenes
retro_mdom_1366, retro_mdom_1880, retro_mdom_663,
Mustela putorius furo ENSMPUG00000012695 ortholog_one2one 2 retrogenes
retro_mputfur_602, retro_mputfur_706,
Mus musculus ENSMUSG00000014504 ortholog_one2one 3 retrogenes
retro_mmus_1680, retro_mmus_3241, retro_mmus_686,
Nomascus leucogenys ENSNLEG00000011571 ortholog_one2one 1 retrogene
retro_nleu_3068,
Oryctolagus cuniculus ENSOCUG00000015639 ortholog_one2one 3 retrogenes
retro_ocun_1003, retro_ocun_1548, retro_ocun_729,
Otolemur garnettii ENSOGAG00000008579 ortholog_one2one 1 retrogene
retro_ogar_2070,
Ochotona princeps ENSOPRG00000010549 ortholog_one2one 3 retrogenes
retro_opri_400, retro_opri_75, retro_opri_793,
Pongo abelii ENSPPYG00000029584 ortholog_one2one 1 retrogene
retro_pabe_1569,
Pteropus vampyrus ENSPVAG00000004895 ortholog_one2one 1 retrogene
retro_pvam_1465,
Rattus norvegicus ENSRNOG00000020204 ortholog_one2one 2 retrogenes
retro_rnor_1340, retro_rnor_997,
Ictidomys tridecemlineatus ENSSTOG00000000348 ortholog_one2one 2 retrogenes
retro_itri_318, retro_itri_831,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_848 95.10 99.31
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2. retro_cfam_1207 100.00 97.92
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3. retro_cfam_1717 100.00 100.00
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4. retro_cfam_1791 66.67 90.28
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5. retro_cfam_2174 95.92 67.36
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Download FASTA sequences of all ENSCAFG00000031549 retrocopies