Parental gene:

C15orf40, ENSCJAG00000015877

Aliases:None
Description:chromosome 15 open reading frame 40 [Source:HGNC Symbol;Acc:28443]
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:22677313..22700114(-)


>ENSCJAG00000015877
ATGCTGCGGCTCTACAGAGCGCTGGGGCAGGTCGGGGCAGAACCCAGTACTTGGGGTTCCGCTCGGCGTCCTCTTGCCGC
CGAGATGCCTAAGAAGGCTGGTGCGACGACCAAGGGTAAAAGCCAGAGCAAAGAGCCAGAGAGATCTCTTCCTCCCTCAG
GGCCTGTGGCAGTTGATCCTAAAGGTTGTGTCACCATAGCCATCCATGCCAAACCTGGCTCCAAACAAAATGCTGTAACA
GATTTGACAGCAGAAGCCATCAATGTAGCTATTGCAGCACCTCCATCAGAGGGAGAGGCTAACGCTGAGCTCTGTCGGTA
TCTTTCCAAGGTCCTAGAACTCAGGAAGAGTGATGTGGTTTTGGATAAGCTCTGCTATTCCATTCCTCAACAATTGGAGG
GGACTCAGGAGGGCGTTTTAGGTATTCCTGATATTCCTTGTCATCTTCTGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 3 .93 RPM
SRP051959_skeletal_muscle 8 .52 RPM
SRP051959_lymph_node 4 .41 RPM
SRP051959_lung 3 .94 RPM
SRP051959_liver 4 .05 RPM
SRP051959_kidney 5 .06 RPM
SRP051959_heart 4 .81 RPM
SRP051959_colon 3 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016522 ortholog_one2one 2 retrogenes
retro_btau_1724, retro_btau_485,
Canis familiaris ENSCAFG00000013185 ortholog_one2many 2 retrogenes
retro_cfam_39, retro_cfam_420,
Equus caballus ENSECAG00000022459 ortholog_one2many 1 retrogene
retro_ecab_374,
Homo sapiens ENSG00000169609 ortholog_one2one 1 retrogene
retro_hsap_1881,
Gorilla gorilla ENSGGOG00000023062 ortholog_one2one 1 retrogene
retro_ggor_1378,
Microcebus murinus ENSMICG00000009564 ortholog_one2one 2 retrogenes
retro_mmur_1387, retro_mmur_1601,
Myotis lucifugus ENSMLUG00000007515 ortholog_one2one 1 retrogene
retro_mluc_2487,
Macaca mulatta ENSMMUG00000015890 ortholog_one2one 1 retrogene
retro_mmul_664,
Monodelphis domestica ENSMODG00000019374 ortholog_one2many 1 retrogene
retro_mdom_145,
Nomascus leucogenys ENSNLEG00000010930 ortholog_one2one 1 retrogene
retro_nleu_1803,
Oryctolagus cuniculus ENSOCUG00000005072 ortholog_one2many 1 retrogene
retro_ocun_211,
Procavia capensis ENSPCAG00000016446 ortholog_one2one 1 retrogene
retro_pcap_51,
Pongo abelii ENSPPYG00000006737 ortholog_one2one 1 retrogene
retro_pabe_1561,
Rattus norvegicus ENSRNOG00000019514 ortholog_one2one 2 retrogenes
retro_rnor_1547, retro_rnor_2334,
Sorex araneus ENSSARG00000006314 ortholog_one2one 1 retrogene
retro_sara_147,
Sarcophilus harrisii ENSSHAG00000017947 ortholog_one2one 2 retrogenes
retro_shar_233, retro_shar_442,
Sus scrofa ENSSSCG00000030131 ortholog_one2one 1 retrogene
retro_sscr_221,
Tupaia belangeri ENSTBEG00000014387 ortholog_one2one 6 retrogenes
retro_tbel_1151, retro_tbel_2000, retro_tbel_3071, retro_tbel_3546, retro_tbel_4182, retro_tbel_4371,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1108 64.34 83.33
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2. retro_cjac_4086 96.03 100.00
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Download FASTA sequences of all ENSCJAG00000015877 retrocopies