Parental gene:

C21H15ORF40, ENSBTAG00000016522

Aliases:C21H15orf40, C15orf40
Description:UPF0235 protein C15orf40 homolog [Source:RefSeq peptide;Acc:NP_001068854]
Organism:Cow (Bos taurus)
Coordinates:21:23721988..23728300(-)


>ENSBTAG00000016522
ATGTGTCCTTATTCATCTTTACTCATCCTTTGCTTCCACACTCCCCTGGGTAAAAACCAGAGCAAGGAACCAGAGAGACC
ACTTCCTCCCTTAGGTCCTGTGACAGTTGATCCTAAAGGCGGTGTCAGCATAGCCATCCATGCCAAACCGGGTTCCAAAC
AAAATGCTGTGACAGATGTGACAACCGAGGCTGTGAGTGTAGCCATTGCCGCACCTCCGACAGAGGGAGAGGCTAACGCA
GAGCTGTGTCGCTATCTTTCCAAAGTCTTAGAACTCAGGAAGAGTGATGTGGTTTTGGATAAGGGTGGTAAATCTCGTGA
AAAAGTGGTGAAGCTTTTGGCCTCCACACCTCCGGAAGAGATCTTGGAGAAATTGAAAAAGCAAGTTGAAAAGAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 12 .56 RPM
SRP017611_kidney 19 .38 RPM
SRP017611_liver 7 .78 RPM
ERP005899_muscle 8 .97 RPM
ERP005899_liver 12 .47 RPM
SRP030211_testis 15 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013185 ortholog_one2many 2 retrogenes
retro_cfam_39, retro_cfam_420,
Callithrix jacchus ENSCJAG00000015877 ortholog_one2one 2 retrogenes
retro_cjac_1108, retro_cjac_4086,
Equus caballus ENSECAG00000022459 ortholog_one2many 1 retrogene
retro_ecab_374,
Homo sapiens ENSG00000169609 ortholog_one2one 1 retrogene
retro_hsap_1881,
Gorilla gorilla ENSGGOG00000023062 ortholog_one2one 1 retrogene
retro_ggor_1378,
Microcebus murinus ENSMICG00000009564 ortholog_one2one 2 retrogenes
retro_mmur_1387, retro_mmur_1601,
Myotis lucifugus ENSMLUG00000007515 ortholog_one2one 1 retrogene
retro_mluc_2487,
Macaca mulatta ENSMMUG00000015890 ortholog_one2one 1 retrogene
retro_mmul_664,
Monodelphis domestica ENSMODG00000019374 ortholog_one2many 1 retrogene
retro_mdom_145,
Nomascus leucogenys ENSNLEG00000010930 ortholog_one2one 1 retrogene
retro_nleu_1803,
Oryctolagus cuniculus ENSOCUG00000005072 ortholog_one2many 1 retrogene
retro_ocun_211,
Procavia capensis ENSPCAG00000016446 ortholog_one2one 1 retrogene
retro_pcap_51,
Pongo abelii ENSPPYG00000006737 ortholog_one2one 1 retrogene
retro_pabe_1561,
Rattus norvegicus ENSRNOG00000019514 ortholog_one2one 2 retrogenes
retro_rnor_1547, retro_rnor_2334,
Sorex araneus ENSSARG00000006314 ortholog_one2one 1 retrogene
retro_sara_147,
Sarcophilus harrisii ENSSHAG00000017947 ortholog_one2one 2 retrogenes
retro_shar_233, retro_shar_442,
Sus scrofa ENSSSCG00000030131 ortholog_one2one 1 retrogene
retro_sscr_221,
Tupaia belangeri ENSTBEG00000014387 ortholog_one2one 6 retrogenes
retro_tbel_1151, retro_tbel_2000, retro_tbel_3071, retro_tbel_3546, retro_tbel_4182, retro_tbel_4371,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_485 86.81 68.18
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2. retro_btau_1724 79.41 77.27
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Download FASTA sequences of all ENSBTAG00000016522 retrocopies