Parental gene:

ENSCJAG00000012315

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:63084445..63090859(-)


>ENSCJAG00000012315
ATGCTCGACGGAAGGCAGCGCCGCGGATCGAGTGCTCCCACATCCGACATGCCTGGGACCACGCTAAATCGGTGCGGCAG
AACCTGGCCGAGATGGGGTTGGCTGTGGACCCCAACAGGCGGTGCCCTCCGTAAGAGAAAGGTGAAGGTCATGGAGGTGG
ACATAGAGGAGAGGCCTAAGGAGCTTGTGCGGAAGCCCTATGTGCTGAATGACCTGGAGGCAGAAGCCAGCCTTCCAGAA
AAGAAAGGAAATACTCTGTCTCGGGACCTCATCGACTATGTACGCTACATGGTGGAGAACCACGGGGAGGACTATAAGGC
CATGGCCGCGATGAGAAGAATTACTATCAAGATACCCCAAAACAGATTCGGAATAAGATCAATGTCTATAAACGCTTTTA
CCCAGCAGAGTGGCAAGACTTCCTCGATTCTTTACAGAAGAATAAGATGGAGGTTGAGTGACTGGTTTACATCACACCTG
TCCCAGGCTGAGGCCTCTCCCGGACCAGGGAAGCTGAAGCTGGAGTCAGGGTGTAAGGCAAGGAGGTGTGTGGCTTCAGA
GGGGCTGGCCAGATCCCGTGGAATCAGAAGGTTACACACACGAACGCATACTCCTCACTCTGGGGAAGGAACTGTTATCA
GAGGCTCTAATTTATATTCTTCTGGGGGTTCATGGAAAAGCCAGAACCTGCTGTTTTCAGGGTGGGTGATTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 3 .61 RPM
SRP051959_skeletal_muscle 6 .38 RPM
SRP051959_lymph_node 4 .04 RPM
SRP051959_lung 3 .81 RPM
SRP051959_liver 7 .67 RPM
SRP051959_kidney 6 .26 RPM
SRP051959_heart 4 .35 RPM
SRP051959_colon 2 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016694 ortholog_one2many 2 retrogenes
retro_cfam_1790, retro_cfam_1793,
Cavia porcellus ENSCPOG00000026072 ortholog_one2many 1 retrogene
retro_cpor_129,
Echinops telfairi ENSETEG00000010391 ortholog_many2many 1 retrogene
retro_etel_1329,
Myotis lucifugus ENSMLUG00000003504 ortholog_one2many 1 retrogene
retro_mluc_2425,
Mustela putorius furo ENSMPUG00000012552 ortholog_many2many 1 retrogene
retro_mputfur_381,
Mus musculus ENSMUSG00000025869 ortholog_one2many 2 retrogenes
retro_mmus_3033, retro_mmus_3258,
Otolemur garnettii ENSOGAG00000000824 ortholog_one2many 2 retrogenes
retro_ogar_1323, retro_ogar_2299,
Rattus norvegicus ENSRNOG00000017284 ortholog_many2many 1 retrogene
retro_rnor_2739,
Sus scrofa ENSSSCG00000029577 ortholog_one2many 1 retrogene
retro_sscr_510,
Ictidomys tridecemlineatus ENSSTOG00000004869 ortholog_one2many 1 retrogene
retro_itri_1124,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2208 85.39 100.00
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Download FASTA sequences of all ENSCJAG00000012315 retrocopies