Parental gene: | COX6B1, ENSCJAG00000010211 |
| Aliases: | None |
| Description: | cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) [Source:HGNC Symbol;Acc:2280] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:29477780..29487919(+) |
>ENSCJAG00000010211
CACCCTCATCCTCAGATACCGGCTCGAGATATCGCCGGATTCAGCACCATGGCAGAAGAGATGAAGGCCAAACTCAAGAA
CTACAAGACTGCCCCTTTTGACAGCCGCTTTCCCAACCAGAACCAGACCAGGAACTGCTGGCAGAACTACCTGGACTTCC
ACCGCTGTGAGAAGGCCCTGAGTGCTAAAGGAGATGATGTGTCTGTGTGCCAATGGTACCGGCGTGTATACAAGTCCCTC
TGCCCCATATCCTGGGTCACAGACTGGGACGAGCAGCGGGCTGATGGCACTTTTCCCGGGAAGATCTGA
CACCCTCATCCTCAGATACCGGCTCGAGATATCGCCGGATTCAGCACCATGGCAGAAGAGATGAAGGCCAAACTCAAGAA
CTACAAGACTGCCCCTTTTGACAGCCGCTTTCCCAACCAGAACCAGACCAGGAACTGCTGGCAGAACTACCTGGACTTCC
ACCGCTGTGAGAAGGCCCTGAGTGCTAAAGGAGATGATGTGTCTGTGTGCCAATGGTACCGGCGTGTATACAAGTCCCTC
TGCCCCATATCCTGGGTCACAGACTGGGACGAGCAGCGGGCTGATGGCACTTTTCCCGGGAAGATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 20 .02 RPM |
| SRP051959_skeletal_muscle | 72 .15 RPM |
| SRP051959_lymph_node | 20 .75 RPM |
| SRP051959_lung | 16 .71 RPM |
| SRP051959_liver | 43 .28 RPM |
| SRP051959_kidney | 35 .99 RPM |
| SRP051959_heart | 49 .13 RPM |
| SRP051959_colon | 30 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000000563 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000006913 | ortholog_many2many | 7 retrogenes | |
| Equus caballus | ENSECAG00000012317 | ortholog_one2many | 3 retrogenes | |
| Felis catus | ENSFCAG00000006378 | ortholog_many2many | 5 retrogenes | |
| Homo sapiens | ENSG00000126267 | ortholog_one2one | 5 retrogenes | |
| Microcebus murinus | ENSMICG00000009902 | ortholog_one2many | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000011365 | ortholog_many2many | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000016765 | ortholog_one2one | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000013962 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000006258 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000036751 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011283 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009606 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004148 | possible_ortholog | 4 retrogenes | |
| Oryzias latipes | ENSORLG00000006070 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010854 | ortholog_one2one | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000012821 | ortholog_one2many | 8 retrogenes | |
| Rattus norvegicus | ENSRNOG00000024309 | ortholog_many2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000010771 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000002907 | ortholog_many2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000014563 | ortholog_one2one | 8 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002241 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_268 | 63.95 | 84.31 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1513 | 52.75 | 88.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2007 | 98.88 | 87.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2870 | 63.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2924 | 57.14 | 88.24 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010211 retrocopies